Detail



ID : Ahg895629

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|895629|Al_scaffold_0006_3625
Sequence
ATGCAGATCT TCGTTAAAAC TCTCACCGGA AAGACTATCA CCCTTGAGGT GGAAAGCTCT GACACCATCG ACAACGTTAA AGCCAAGATC CAGGACAAGG AAGGCATTCC TCCGGATCAG CAGAGGCTTA TTTTCGCCGG AAAGCAGTTG GAGGATGGCC GTACGTTGGC TGATTACAAC ATCCAGAAGG AATCCACCCT CCACTTGGTT CTCAGGCTCC GTGGTGGTAT GCAGATTTTC GTCAAGACCC TAACGGGAAA GACGATTACT CTTGAGGTGG AGAGCTCCGA CACCATTGAC AACGTAAAGG CCAAGATCCA GGATAAGGAA GGTATCCCTC CGGACCAGCA GAGGTTGATC TTCGCCGGAA AACAGTTGGA GGATGGTCGT ACCTTGGCGG ATTACAACAT CCAGAAGGAG TCGACCCTTC ACTTGGTGTT GCGTCTCCGT GGAGGTATGC AGATCTTCGT CAAGACTTTG ACCGGAAAGA CCATCACCCT TGAAGTGGAG AGCTCCGACA CCATTGACAA CGTGAAGGCT AAGATCCAGG ACAAGGAAGG TATCCCTTTG GACCAGCAGC GTCTCATCTT CGCTGGAAAG CAGCTTGAGG ATGGTCGCAC TTTGGCCGAT TACAACATCC AGAAAGAGTC TACTCTTCAC TTGGTCCTCC GTCTCCGTGG TGGTTTTTAA 
Length690
Protein Sequence
Protein Residue
Map Locationscaffold_6: 21505172.. 21505916
Download Sequence
A.thaliana
AGI-codeAT4G05050.1
Descriptionubiquitin 11
TAIR curator summarypolyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.
Alias[UBQ11][ubiquitin 11]
Gene coexpression
MR
MR Locus Description
4.12311 Ahg914626 ubiquitin 9
7.74597 Ahg490270 polyubiquitin 10
10.583 Ahg490179 polyubiquitin 10
49.689 Ahg488679
50.7346 Ahg478302 ubiquitin 8
51.303 Ahg477807 RING/U-box superfamily protein
56.6127 Ahg946890 RmlC-like cupins superfamily protein
75.02 Ahg475766 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
80.4612 Ahg495173 Clp ATPase
83.6899 Ahg493344 Bax inhibitor-1 family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression