Detail



ID : Ahg490179

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|490179|fgenesh2_kg.6__3313__AT4G05320.4
Sequence
ATGCAGATCT TTGTTAAGAC ACTCACCGGA AAGACTATCA CCCTCGAGGT GGAAAGCTCT GACACCATCG ACAACGTTAA GGCCAAGATC CAGGACAAGG AAGGCATTCC TCCGGATCAG CAAAGGCTTA TTTTCGCCGG AAAACAGCTA GAAGATGGCC GCACGTTGGC TGATTACAAT ATCCAGAAGG AATCCACCCT CCACTTGGTT CTCAGGCTCC GTGGTGGTAT GCAGATTTTC GTCAAGACCC TAACGGGAAA AACTATTACT CTTGAAGTGG AGAGTTCTGA CACCATCGAC AACGTCAAGG CCAAGATCCA AGATAAGGAG GGTATTCCTC CGGATCAGCA GAGGTTGATC TTCGCCGGAA AGCAGTTGGA GGATGGCAGA ACCCTTGCTG ACTACAACAT CCAGAAGGAG TCGACCCTTC ATCTTGTTCT CAGGCTCCGT GGTGGTATGC AAATCTTCGT CAAGACGTTG ACTGGAAAGA CTATCACTTT GGAGGTGGAG AGCTCTGACA CCATCGACAA TGTCAAAGCC AAGATCCAGG ACAAAGAGGG TATTCCTCCG GACCAGCAGA GGTTGATCTT CGCCGGAAAG CAACTTGAAG ACGGCAGAAC TTTGGCTGAC TACAACATTC AGAAGGAGTC TACCCTTCAT TTGGTGTTAC GTCTGCGTGG AGGTATGCAG ATTTTTGTGA AGACTCTCAC CGGAAAGACC ATCACCTTGG AGGTGGAGAG TTCAGACACT ATTGACAACG TGAAGGCCAA GATCCAGGAT AAGGAAGGTA TCCCTCCGGA CCAGCAGAGG TTGATCTTCG CCGGAAAACA GTTGGAGGAT GGTCGTACCT TGGCGGATTA CAACATCCAG AAGGAGTCGA CCCTTCACTT GGTGTTGCGT CTCCGTGGAG GTATGCAGAT CTTCGTCAAG ACTTTGACTG GCAAGACGAT CACTCTTGAA GTCGAGAGCT CTGACACCAT TGACAACGTG AAGGCCAAGA TCCAGGACAA GGAAGGCATT CCTCCGGACC AGCAGCGTCT CATCTTCGCT GGAAAACAGC TTGAGGATGG GCGTACTTTG GCGGACTACA ACATCCAGAA GGAGTCTACT CTTCACTTGG TGCTAAGGCT TCGTGGTGGT ATGCAGATTT TCGTGAAGAC TCTGACCGGG AAGACCATTA CCCTCGAGGT AGAGAGCTCT GACACCATTG ACAACGTGAA GGCCAAGATC CAGGACAAGG AAGGTATCCC TCCGGACCAG CAGCGTCTCA TCTTCGCTGG AAAACAGCTT GAGGATGGTC GCACCTTGGC TGACTACAAT ATCCAAAAGG AGTCTACTCT TCACTTGGTG CTCCGTCTCC GTGGTGGTTT CTAAAAAAAT TTGGTGGTTT GTGTTTTGGG GCCTTGTAAA GCTCCTGATA AATAATTGAT GAACTATGTT TCCGTTCCTG TTATCCCTTT CTTTCTAATG ACAAATCGAA CTTCTTCTCT ATCATCGATC TGTGCTTGTT TTGTTT 
Length1516
Protein Sequence
Protein Residue
Map Locationscaffold_6: 21519123.. 21520472
Download Sequence
A.thaliana
AGI-codeAT4G05320.2
Descriptionpolyubiquitin 10
TAIR curator summaryOne of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
Alias[UBI10][UBQ10][ubiquitin 10][polyubiquitin 10]
Gene coexpression
MR
MR Locus Description
1 Ahg490270 polyubiquitin 10
2.44949 Ahg490155 Ubiquitin family protein
5.47723 Ahg488966 ubiquitin 4
10.583 Ahg895629 ubiquitin 11
11.0905 Ahg943307 ubiquitin 11
18.9737 Ahg919192 ethylene-forming enzyme
24.5357 Ahg922950 thioredoxin H-type 5
27.4955 Ahg914626 ubiquitin 9
29.2916 Ahg470210 S-adenosylmethionine synthetase 1
36.3318 Ahg340627
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression