Detail


ID : Ahg909803

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|909803|Al_scaffold_0001_57
Sequence
ATGAATATAC ACAAAGCCTG CGATCTGAAA TCTATTTCTG CCTTTCCTCC TAATTTAAGA AGGAGATCAG CTGAACCACA ACAAGCATCT CAGCAGTTTC GATCTCAACA GTCACAGCAG TCCTATTCTC AGGGACCTTC TTCGTCTCAG CGTGGTGGTG GTTTTTCTCA GATGACTCAG AGTTCTATTG ATGAACTCCC CATTAACGAT CTGAGGTTTA GTTCTCAGGA AAGAGATCCC TCTTTGAAGA AGGTTAGTTG CTTACCCCCA ATCAATCATA AACGAGAAGA TAGTCAGTTG GTCACATCTA GATCTTCCAG CGGTCTCACG AGAAGATGGA GTTCTGCTTC ACTTGGAGAG TCTAAATTAG CTCAGATCAG TGAAGAGCTT GAGCAACGAT TTGGGATGAT GGAAACTTCT TTGAGCAGGT TTGCAATGAT GTTGGATTCC ATTCAGAGTG ACATCATGCA AGCCAACAGA GGAACTAAAG AAGTATTTCT TGAAACTGAA CGCATACAGC AAAAGTTGAT TCTCCAAGAC ACTTCACTTC AGCAGCTGAT AAAGGAACAA GCCGATTCTA AAGCTAGTCT TGATGGAGGT GTTAAATCTA TATTGGAGGA ATTCAGCAAA GATCCTAATC AGGAGAAGCT ACAGAAAATC TTACTGATGC TAACAACTAT CCCAGAGCAA GTAGAAACCG CTCTGCAGAA AATACAAAGG GAAATCTGTC ACACGTTCAC CAGAGAGATT CAGGTCTGGG CTAGCTTGAA GACGCCTGAA CCAAGGGTTC AGGTTCCAAC AGCACCACAA GTGAAGGCTA AGGAAAACCT GCCTGAGCAG CGTGGTCAAG CAGCCAAGGT TTTGACTAGC TTGAAGATGC CTGAGCCAAG AGTTCAGGTT CCAGCAGCAC CACAAGCTAA GGAAACATTG CCTGAGCAGC GCGGTACAGC AGCCAAGAGC AATTCCCTTT GTAATACTAT ACTGAAAACT AAACAACCGC AGCTTCCAAG AAAACCAAAT AGCGCATCAG CCAGAGCTGT GAAACCATAT TTGTCCCCAA AGATACAAGT GGGATGTTGG AAGACTGTGA AACCAGAAAA AAGCAATTTC AAGAAAAGAG CAACAAGAAA GCCAGTGAAA TCCGAAAGCA CTCGTACGCA GTTTGAGCAA TGCAGTGTTG TGATAGACTC CGATGAAGAA GATATTGATG GAGGTTTTTC ATGCCTGATC AACGAGAACA CCAAAGGAGC TAACTTCGAA TGGGACGCAG CGAAGGAAAC TGAAAGGATT CTGAGGACAG CGAGGAGGAC AAAGAGGAAG TTCGTTGGTA TATCTGAAAT GTCGATCGAA AACCATGTCG AAGAAAAGCT TCGCTCAAAT AGACAAGAGA GAGATCAGTT AGGCTGGATA TCTGTTTTTT TCAGAAGGAA GAAGAGATCA CCACAAGAAG TTGATAATGA ACATAACTCA TCTAAAGATT CTCGTTTGAT GGGAAGAAAC AAAGCCAAGA ATTTGCATTT GTTTCTCTCT GAGATCATGA GAAAACTGAA ACATGCAATC AGAAAGGAGA AACCGCGGTA CGACAGGAGA TTGTTAGGGA AGGAAAAAAG CTTTCAGAAG TATTCGTCAA CTAAAGATCA TTTCTTTCTC GAGCGGATGA CTTCAATATC TCAAAAGAGA TTTAACCAAG GACACTATGG GTCTAAGATG TTAAAGAATG GAGATTATGA TCCAAACATG GCAACGAGCA AACAGGTTCA AAGAAATCAA GAAAGGACTT TATGGCTTCC CGAGTATTCG TCTCCTTTTA GCAGCCCGGG AAGAATATGG AAACAGAATT CAAAAACCGT GCTTTCGAGA TCTTCTTCAG ACGATTTCAT GAAGTCTGAA ACAATTGCAG ATGATTCAAT AACTATGAAA GAGGTAGGAA CTGCTTCATC AAGTGAAGGT AGTAGTAGCC CTCTTGTATC CAAAAACAAC CAGATTGTTG ATGAGATGTC AAAAGTTGCA GCTTATGGTG CAGAGAATGA AGGTGAAGCA AAGATACAAC CTTTGAGTAA CCAATTGCAA GAAAAGAATC GTCCTATGGA TGACAAAGAA TCAGTGTTTA AGTACGTAAA AGCGGTGTTG GATGCAATAG ACTCAAACTG GGAAGAGCTG TATCTGAAAA CAGAATTCTC TGACCAGCTT CTATATCCGG CATTGATCAG CAACATACCA TTCTATCCAA ATCAGCTTTG TGTTGAACAT GAGCTCCTCT TCGACTGCAT CAATGAAGTT CTCTTCGAAT TCTGCAGGTT TCCTCAATGG GTTTCCTTTA TTGAAACCAG AACCCAAGTC TTGTCGTTTA GTGTTGAAAG CATTGTTCCC GAGGTTCAAG AAAAGGTTTG CCGTCATCTC TTGCCAATGC AACTCCGTCG ATCGTTGGAA CAAAGAGTTA GAGAAGACAT GGCTAAACAC AGGAGCTGGA TAGACATTAG ATGTGAACTT GAGTGCATTG GCTTTGAGAC TAGCGAATTG ATTCTGAATG AACTATTGGA ACAACTCATG GTTGAGCTTG ACTTATGA
Length2568
Protein Sequence
Protein Residue
Map Locationscaffold_1: 206867.. 212321
Download Sequence
A.thaliana
AGI-codeAT1G01690.1
Descriptionputative recombination initiation defects 3
TAIR curator summaryEncodes a novel plant-specific protein that is involved in meiotic double strand break formation.
Alias[ATPRD3][PRD3][ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3][putative recombination initiation defects 3]
Gene coexpression
MR
MR Locus Description
8.24621 Ahg486235 Cysteine proteinases superfamily protein
9.79796 Ahg491556 ATP-dependent caseinolytic (Clp) protease/crotonase family protein
20.445 Ahg349774
21.4476 Ahg888763 AP2/B3-like transcriptional factor family protein
22.0454 Ahg495653 DEK domain-containing chromatin associated protein
30.05 Ahg488655 microfibrillar-associated protein-related
33.6749 Ahg342948
34.641 Ahg487092 RING/U-box superfamily protein
35.7771 Ahg473561 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
37.2425 Ahg905423 RNA-binding (RRM/RBD/RNP motifs) family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression