Detail



ID : Ahg915796

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|915796|Al_scaffold_0008_547
Sequence
ATGTCTGTGT CGAAGAGCTT CTCGTCGGCT GAGATTCCCG ATGTGGCAGA CCAACCACGC GACCGATTTA ACCCGCAAGC TGAACAGGAT CCACAAGACA AGGCTGAGAA GAAAGAAGGA GACGATGAGG AAGTGAAACA CGACGAAACG GAGCAAGAAG AAGAAGAAGT GATGATACCC AACGAAGCCG ACGAAGAAGA GGAAGAAGAT GGTGACGAGA AGGAGGAAGA AGAAGAGGAA GAAGAAGCAG AGGAAGAGGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA AGAGGAAGAC GAAGAAGAAG AAGATTCTAA ATCTTCTATA TCAAGAGACC AATCAGAATT TATGGAAATT GATCTAGGGG AAATCCGTAA AGACGTGCAG TGTCCAATAT GCCTAGGAAT TATAAAGAAA ACAAGGACTG TGATGGAATG CCTTCACAGG TTCTGCAGGG AATGTATTGA TAAGTCCATG AGATTGGGGA ACAATGAATG TCCTGCTTGC AGGAAGCATT GTGCAAGCCG GCGTTCTCTA AGAGACGACC CAAAGTTTGA TGCTCTTATT GCAGCTTTAT TCACAAATAT TTATAGTTAT GAGGAAGAGG AACTGGCTTT TCACGAAGAT GAAATGGCTC GTAATAAGCA GATTCAAGCA TCTATAGCTC AAATATCGCA ACGACAATCT GAGGCTCTTG TGAAAAGACG ATCTTTGGGT AAAGAGGCAG CCGTCTTAAT GAGATCACCG CGTATTGCTA GTAGCTCCAG AAGGAGACGG AACTGCAGAA ACATGGAACA ACAAAACGCA TCAGAAGCCC ATGACGATGA TAATAATGAT GATAATAACA ACAGAGGAGG AGACAAAGAT TCGTCTTCAG ATGAGCGTGG TACAGAAGTC CGGCAGAAGA AACGTAGAAA ACGGTCTACA AGTCGTTCAA CACAACACCC TTCTTCTTCT GGTGCAAACA AAAACAATGG TAACTGTGCA GATAATGACA CAGAAGTGTA TAGAGACAGC AAAGGAATAT CTCCCGGGCT TGTGTGGAAT CAAGAGATAC TGGCTTGGGG AAGAGGCGGG ACAAGGAGTA ACACAAGACA TGGGAATAGT ACTTCAGGAG GTAGTAGTAA GAGTGTGAGG AATGCTCGTG TGAACAAGCT TGTTGAATAC CTACGTAGCA GCATAGATGG ATCTAGCGTT GAGTTAGATA TTCATGTCAA GCTTGTCTCG CTGGATACAA AATGTATACC AGACTTACCA CAGCCATATC TCTGTTGCCG ACCCACTTTG CTTGTAAAAC AGCTCCGTGA ATTCGTAGCA CTTCAGATGC ATTTGAAGAC TGAAGAGGTT GAATTGTTGG CAACAAGAAG AGGAGGAGAA GATATGGCAA TAGAGAATCT TCCTGTAGTG ACTCCAGCTT CAGCAGCAAC ATCCAAAGAT GAGATGCAAA GTCTGGAAGA CAATGAAACA TTTTCAAGGC TCAAAGTCGA TTTCATTTCA AGCCATGAAC AACATTTGAT CATAGCTTAT CGGAAGAAGC AAACCGAGTG A 
Length1551
Protein Sequence
Protein Residue
Map Locationscaffold_8: 3321403.. 3324565
Download Sequence
A.thaliana
AGI-codeAT5G44280.2
DescriptionRING 1A
TAIR curator summaryEncodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.
Alias[ATRING1A][RING1A][ARABIDOPSIS THALIANA RING 1A][RING 1A]
Gene coexpression
MR
MR Locus Description
46.5403 Ahg907782
53.8609 Ahg919936 ARM repeat superfamily protein
58.5662 Ahg947629 myb family transcription factor
77.3175 Ahg484914 transposable element gene
82.8674 Ahg483906 ribonuclease Ps
86.5101 Ahg897670 histone deacetylase7
87.8408 Ahg949163 Ubiquitin carboxyl-terminal hydrolase family protein
88.7468 Ahg471458
95.247 Ahg897242 Protein of unknown function (DUF626)
95.7183 Ahg478448 TRICHOME BIREFRINGENCE-LIKE 32
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression