Detail



ID : Ahg917759

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|917759|Al_scaffold_0008_2510
Sequence
ATGGCTTTCA ACAGTCGAAT CGACAACGTT CTCCGACGCA AGAGGCGAGA AAGCGAGGTC TCCATCAGAG AAGGAGAAAG CGAGATCTCC ATCAGAGAAG GAGAAAGCGA GGACTCAACT CGCCATATTG TCACTGCCCT TTTGAAGAAT TGCAGCTATG AAGTTACTGC TGTTCCGGAT GTTCTTGAAG CCTGGAGAAT TCTAGAAGAT GAGAAGAGTT GCATTGATCT TGTATTAACA GAGGTTGTCA TGCCTGTGCA TTCTGGAACT GGTCTGTTGT CCAAGATTAT GAACTTGGGC TTGCAAACAA CAAATCAGGT AGCTGAGTGT AGCATCATCA GGATTCTCGT TCTCCCCGCC TTCATTCTCA AAGTCTTCTT CAATCTGAAT CTCTTCCCAG TCCCTATGTC ATTCGCCAAA CTGTTTACAC ATATCATGAA CTACCCAAAA GATACACTGT AG 
Length462
Protein Sequence
Protein Residue
Map Locationscaffold_8: 18214909.. 18215634
Download Sequence
A.thaliana
AGI-codeAT5G60100.2
Descriptionpseudo-response regulator 3
TAIR curator summaryEncodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.
Alias[APRR3][PRR3][pseudo-response regulator 3]
Gene coexpression
MR
MR Locus Description
4.79583 Virus3160
9.79796 Virus3781
10.247 Virus1001
22.9129 Virus3045
24.98 Virus1086
29.9333 Ahg945237 Tetratricopeptide repeat (TPR)-like superfamily protein
32.8634 Ahg900664
35.4965 Virus0774
40.5832 Virus3898
44.4522 Ahg321132 Cysteine proteinases superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression