| Annotation |
|---|
| Description | jgi|Araly1|919635|scaffold_100916.1 |
| Sequence |
GTTCTAGTTT CGAAGAAGAC GATGAGTACA GGCGCAGGAA GCGGAACAAC CAAAGGTGGC AGAGGGAAGC CAAAGGCCAC CAAATCCGTC TCTCGTTCGT CCAAAGCCGG TCTTCAATTC CCAGTCGGAA GAATCGCCAG ATTCCTCAAA GCCGGTAAAT ACGCCGAGCG TGTCGGTGCC GGAGCTCCGG TCTATCTCTC CGCTGTTCTC GAGTACCTCG CCGCTGAGGT GTTGGAGCTT GCGGGAAACG CAGCAAGGGA TAACAAGAAG ACGCGTATAG TACCAAGACA TATTCAGCTT GCAGTGAGGA ACGATGAAGA GCTGAGTAAA CTTCTGGGAA GTGTGACGAT TGCGAATGGA GGTGTTTTGC CTAATATACA TCAGACTCTT TTGCCTTCCA AGGTTGGCAA GAACAAAGGA GATATTGGAT CTGCTTCTCA GGAGTTCTGA GTTTCTTCTT TGTTCTGTTT |
| Length | 470 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 3198261.. 3198827 |
| Download Sequence |
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| A.thaliana |
|---|
| AGI-code | AT1G08880.1 |
| Description | Histone superfamily protein |
| TAIR curator summary | Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. |
| Alias | [G-H2AX][GAMMA-H2AX][H2AXA][HTA5][GAMMA H2AX][gamma histone variant H2AX][histone H2A 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 14.6629 |
Ahg494941 | Ribosomal protein L13 family protein |
| 19.2873 |
Ahg943771 | Histone superfamily protein |
| 27.1293 |
Ahg497006 | winged-helix DNA-binding transcription factor family protein |
| 28.1425 |
Ahg488462 | Ribosomal protein S7e family protein |
| 39.1918 |
Ahg484659 | Ribosomal protein L34e superfamily protein |
| 47.2864 |
Ahg893515 | general regulatory factor 5 |
| 47.7703 |
Ahg496408 | Ribosomal protein S10p/S20e family protein |
| 51.788 |
Ahg320951 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| 52.6308 |
Ahg478235 | Ribosomal protein L10 family protein |
| 55.1181 |
Ahg931417 | Ribosomal protein L31e family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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