Detail


ID : Ahg924291

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|924291|scaffold_105572.1
Sequence
AAAGAAGGAG TAAGACAGTC ATGTTACTTT GCTTTGCTGC TTTCGCTATT GATCCTTTGT TTCTGTTTAT CCCTGTGATT GATTCTCATA GATTCTGCTT TACTTATGAC AAGAAGCTAG GACTAGCAGC TTGTCTCATT CGTATTTTTA TCGACTCATT CTATGTAATT CACATCATTT TCCGTTCAAT AACCGAGCTC ATTGCTCCTC GATCACAAGT GGTGGTTCTC ACTTTCTTTA TACGGAAGCA ACAGTCTGCC TTGCTGGTGT CAAAGGACAT ATTAAAAAAG GTTATAATAT GTCAATATAT ACCAAGAATC CTCCGTATCT ATCCGCTTTT CCAAGAAGTG ACAAAGGCCT CTGGTACGGT AGTAGAAACA AAGTGGATTG GAGCTGCTTT AAATCTTTTC CTCTACATGC TTCCGAGTTA TGTCTTTGGG GGTTTCTGGT ACTTGAATGC AATACAAAGG GAAAACTTAT GCTGGCATGA TGTGTGTGTT AGAACACGTG GATGCAATGT CATGAATCTA TATTGTGCAC GAGGTAGCGA AGACAACAAT TGTTTTCTGA ACAATTCATG CCCATTAATT GACCCTGGCC AAATCACAAA CTCCACAGTC TTCAATTTTG GTATGTATAT TGATGCATTG AAGTCAGGGG TGGTAGAGTC CAGGTATTTT CCAAGGAAGT TCTTCTACTG CTTTTGGTGG GGTCTTCGAA ATCTTAGGTT TGTAAATCTA AACTTTATTG CTTTGGGCCA AAACCTGGAG ACAAGCAACT CTGTAGAGGA GATCGTGTTT GCTATCAACA TCTGTATACT TGGTTTACTC TTGTTTGCTT TACTCATTGG AAACGTTCAG AAGTACTTGC AATCGACTAC GATCAAAATA GATGAAATGG AGGAGAGAAA AAGAGACATA GAAAAATGGA TGTCTTATCG GAACCTACCC GACGATCTCA AGCAACGCAT TAGGAAATAC GGGGAATACA CATGGAAACA AACTAGAGGC ATCGAAGAAG AAGCTCTTCT TCGTAGCCTT CCTATAGACC TCAGACTCGA AACCAAACGA CATCTTTACC TGAATCTATT AAAGGGTGTT CCTTTGTTTG AGGGCATAGA TGATGGTTGG TTACTAGCAG CAGTGTGCAA CCGGGTGAAG TATGTGTTCT ACTCGGCAGA TAGCTACATA GTAAAAGAGG GTGACCCATT GGAGGAAATG CTGATTATAA CAAAAGGAAA ACTAAAAAGT ACAACTAGGT CTCATGAAAT AGGTGAAGAA CTAAAAGCAG GTGACATATG TGGACAACTT CTCTTTAATA GTTCTTGCCT TCCCACCTCA ACCAGAACTA TAATAACTCT TACCGAAGTT GAAGGCTTCA CTCTCTCGCC TGATGATGTC AAGTTTGTAG CTTCTCATTT TAACCACCTT CAAAGCGTGA TACACAAACA AATGAGCAGG CAAGGCTTAG AAACCGAAGT AGGATTTAAA GTTTTTTTTT TACCACCTTA AACTAACCAT ATGACCTCAA ATAT
Length1534
Protein Sequence
Protein Residue
Map Locationscaffold_1: 30096693.. 30098717
Download Sequence
A.thaliana
AGI-codeAT2G46450.1
Descriptioncyclic nucleotide-gated channel 12
TAIR curator summaryMember of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.
Alias[ATCNGC12][CNGC12][cyclic nucleotide-gated channel 12]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg946631
4.58258 Virus3620
6.63325 Ahg930898
7.07107 Virus3785
7.34847 Ahg936680 basic helix-loop-helix (bHLH) DNA-binding family protein
9.16515 Virus3919
10 Ahg943036 Pentatricopeptide repeat (PPR-like) superfamily protein
14.0712 Ahg491178 SAUR-like auxin-responsive protein family
14.8661 Virus3764
16.4317 Ahg344363
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression