Detail



ID : Ahg927447

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|927447|scaffold_203008.1
Sequence
TATTTCTTTG GCGGCAAGAG ATGATGATGC CTTCAACTTC AACCATAATC GCCGGTGAAG AATCGGTAGT ACTACCACCG GTGGCAAGCG TTTCCGGTGA ATCGTCTCTG TCCGATATGA CTCAGACAGT TCATTTTTCA TCTGGAAACC CTAGAATCGG CGAGACTCGC GGGGTCATGC ATCTATTTTC CGACGATGCC GTTTCGTCGT CTTCTTCCTC CTCCTCCTTG AATCTCCCTA TTGGAAGGAA CCCTCTCGTT TGCGTTCTTG GGGTGCCCAA CCACATGACA TATGCAGATT TTTGCCACTT CTGCGGCTCC TTCATTCAAC ACATACTGGA GATGCGAACG GTCAGGAACG ATGGGATTGA AAATCGATAC AGCATTTTGA TAAGGTTCGA TAGTCAGGAA TCTACCGATA CATTCTACCA GCATTTTAGA GGGAAACAAT TCAACTCTCT GGAGGAAGAT GTCTGTCACC TTCTTTTTAC TCTTGATGTT CAGTTTACCG GTTATAGTGG ATCCATTGAC CATACACAGC CTTCTGCTGC TGGCCCAATA GAGCAACCTA CTTGCCCAGT TTGTCTTGAG AGATTGGACC AAGACACAGG TGGCATTCTC ACAACCATGT GCAATCATTC CTTCCATTGC TCATGTATTT CTAATTGGCC AGATTCTTCT TGCCCAGTTT GTCGATATTG CCAACAGCAA TCTGAAAATT CAGTATGTTG TATTTGCCAA ACAACGGAAA ATCTCTGGAT GTGTGTTATC TGTGGGGTTG TTGGCTGCGG AAGGTACAAG GAAGGACATG CCAGAAGGCA CTGGGAGGAG ACAGATCATT GTTATTCACT TGAGCTTGAA ACACAACGTG TTTGGGATTA TGCTGGTGAC AATTATGTTC ATCGGCTTAT TCAATCCAAA ACTGATGGCA AGCTAGTGGA GTTGAATTCT CATGGTAGGC TGAGCAAGGA TGGTTGTGGA AGCTGTGAAT ATTCTGACAG TGGAATGACT GATGCTCTCC TGAACAGCAA AGTGGACATG TATTTTGAAA AGTTGCTACA AAATGTCAAA GAGGAAACGG AACAGAAAGT CTTAGAAGCT GGGAGCAAGG CAATAAGCCA GAGACTGCAG AAGCTGCAGA CCAGGTTTGA CAGATGTTTA AAAGAGAAGC AATTTCTTGA AGATTTGAAC GAAAATCTTG TGAAAAATAA GGACGTATGG AGCACCAAGA TTACAGAAAT GGAGGAAAGG GAGAAGAAGG CAGTTCGGGT AAAAGATGAA AAGATTGAGG GCTTAGAAGA ACAGCTTGGA AAACTAATGG CCCAAATGGA TGGTGAGAGT GAAGTCTCAG AGACGAAAGA GGTCCAGGAC GCCACTGTCT TGCCCTTGCC GACCACCAGT AACTCTTCTT CTGCGTCAGG GAATGTTATA CATGCAAATA AAAAGAAAAG TAACAGAAGA AAGGGTTAGA TCAAGATTCA GGCTCCAAT 
Length1489
Protein Sequence
Protein Residue
Map Locationscaffold_4: 5218136.. 5220781
Download Sequence
A.thaliana
AGI-codeAT2G26000.2
Descriptionzinc finger (C3HC4-type RING finger) family protein
TAIR curator summary
Alias[BRIZ2][BRAP2 RING ZnF UBP domain-containing protein 2]
Gene coexpression
MR
MR Locus Description
5.74456 Ahg949853 AT hook motif-containing protein
12.7279 Ahg485242 RNI-like superfamily protein
13.8564 Ahg894148
17.8885 Ahg890756 Pre-mRNA-processing-splicing factor
19 Ahg491934 ADP/ATP carrier 3
28.4605 Ahg491599 Protein of unknown function (DUF1644)
33.8231 Ahg496702 programmed cell death 2 C-terminal domain-containing protein
34.8568 Ahg486460 Peptidase family C54 protein
35.4119 Ahg492879 K+ uptake permease 9
39.9249 Ahg489007 aldehyde oxidase 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression