Detail



ID : Ahg890756

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|890756|Al_scaffold_0007_2742
Sequence
ATGCAAAGAG GAGAACGTGG GATTTTGTTT CCCAATTTAA AAGAAAGAAA TTGGTCTCGA CAAAGAGTCT GGTTCGATTG CGGTTTCCGC CGTTTGATGA TGAAGAGCCG GTGTTGGATT ATGCGGTTGG AGCTTGATGA GGAGGATGAT TCTTGTGTGT ATAATTGGTT TTATGATCAT AAGCCACTTT TGAAGACGAG TATGATCAAT GGTCCGAGTG ACAGGAGGTG GAATCTTTCA CTTCCGATTA TGGCAACGCT TCATAGGCTT GCGGGTCAGT TGCTTTCTGA TTTGGTTGAT AGAAACTATT TCTACTTGTT TGATATGCCA TCGTTTTTCA CAGCAAAGGC GTTGAATATG TGTATACCTG GTGGTCCTAA GTTTGAACCT TTGTATCGTG ATATGGAGAA ATATGACGAG GAATGGAACG AGTTTAATGA TATCAACAAG GTTATCACTC GATCACGGCT GCGTACGGAA GGCAGAATTG CTTTCCCTTA CTTGTACAAT AACAGGCCAA GGAAAGTCAA ACTATGTGCG TATCACACTC CAATGGTTAT GTTCATTAAG ACAGAGGATC CTGATCTTCC TGCGTTTTAT TATGATCCGT TGATTAACCC AATAAGTAAC ACTTTTCATG ACAGGAAGGT ATGTGATGAT GATGAGGATG ATTTTGTATT ACCAAACGGA GTGGAGCCTC TGCTACAAGA GACTCAGCTT TACACTGACA CTACAACTGA TGGGATTTCG TTGTTGTTTG CCCCAAGACC TTTCAATATG AGGTCTGGGA AGACGCGACG GGCAGAAGAT ATACCGCTGG TGTCAGAGTG GTTCAAGGAG CACTGTCCAA CATCACATCC GGTCAAGGTT CGGGTTAGTT ACCAGAAGCT TTTGAAATGT TATGTGCTGA ATGATTTGCA CCGTAGACCA CCTAAAGCTC AGAAGAAAAA GCACTTGTTC CGATCTCTTG CAGGTACAAA ATTTTTCCAA AGCACTGAAC TTGATTGGGT TGAAGCTGGT CTGCAAGTTT GTCGGCAGGG CTATAATATG TTGAATCTGT TGATTCACAG GAAGGGTTTG AACTACCTGC ATCTTGATTA CAACTTCAAC CTCAAGCCTG TTAAGACTTT GACGACTAAA GAGCGGAAGA AGTCACGTTT TGGGAATGCT TTTCATCTCT GTCGCGAGAT TCTCCGCCTG ACTCGTGGTA TGTATCGTTA TAAGTACAGA CTGATGAGAC AAATTAGGAT GTGTAAGGAT TTAAAACACT TGATCTATTA CCGTTTCAAT ACTGGTCCTG TGGGTAAAGG ACCAGGGTGT GGATTTTGGG CTCCAATGTG GAGAGTGTGG TTGTTTTTCC TCCGTGGAAT AGTTCCTTTA CTTGAACGAT GGTTAGGGAA TCTTCTTGGA CGTCAATTTG AGGGGCGTCA CTCAAAAGGA ATGGCAAAGA CCGTCACAAA ACAAAGAGTC GAAAGCCATT TTGATTTGGA GCTTCGATCT GCTATCATGC ATGATATCGT TGATGCCATG CCAGAGGGAA CCAAGCAGAA TAAAGTTAGG ACAATAGAAC AGCACCTTAG CGAGGCATGG CGGTGTTGGA AAGCTAATAT CCCGTGGAAG GTCCCTGGAC TGCCTGTGCC AGTTGAGAAT TTGATCCTCC GATATGTGAA GCATAAGGCT GATTGGTGGA CAAATATTAC TCACTTCAAT CGTGAGCGTA TCAGAAGAGG CGCTACTGTT GATAAGACAG TTTGTAGAAA GAATCTTGGA AGGTTGACTC GTCTTTGGTT AAAGGCAGAA CAGGAAAGAC AATACAATTA CCTGAAAGAC GGTTCACCTG TCACTCCGGA CGAAGCTGTG GCAACTTATA GAACGACCCA AGAGTGGCTG GAAGCTAGGA GATTTTCACC AATTCCATTC CCTCCTCTGT CGTACAAACA CGAGACAAAG TTGCTCATCC TCGCCCTTGA GAGACTGAAA GAATCATGTG GAGGTGAAAG GTTGAACCAG CAGCAGCGAG AAGAGCTTGG TCTAATTGAA CAAGCTTATG ACAACCCGCA TGAAACTCTA GCGCGAATTA AACGTCATCT TTTCACGCAG CGTCAGTTCA AAGAAGTGGG CATTGAGTTT ATGGATCTCT ACAGCTATGT GATTCCGGTC TATGAAATTG ATCCTTTAGA GAAAATTACG GATGCCTATC TTGATCAATA CTTGTGGTAC GAGGCTGACA AGCGCCACTT GTTTCCCAAC TGGATTAAGC CTGCCGACTC AGAGCCGCCA CCTCTTCTGG TTTACAAGTG GTGTCAGGGT ATCAACAATT TGCAAGGCAT ATGGGACACA TCTGATGGAC AGTGTGTGGT GATGCTCCAG ACAAAGTTGG AAAAGTTGTT TGAGAAGGTT GATTTCACAT TATTAAACAA GCTTCTTCGT TTGATTGTTG ACCCCAATAT TGCAGACTAC GTGACTGCCA AGAATAATGT GGATCTGTCT TACAAGGATA TGAGTCATAC TAACTCGTAT GGTCTCATCA GGGGACTTCA ATTCTCATCC TTTGTTACTC AGTTTTATGG ACTAGTGCTT GATCTTTTGC TTCTTGGTTT GACTCGAGCG AACGAGATTG CTGGGCCACC GCAGAAGCCT AACGAGTTTA TGACCTATTG GGATACAAAA GTTGAAACAC GCCATCCCAT AAGACTATAT TCTCGGTATG TAGACAAAGT GCACATAATG TTAAAATTTA CCCATGAAGA GGTTCGAGAT CTTATTCAAC GGTATCTTAG GGAGCATCCT GATCCCAATA ATGAGAACAT GGTGGGATAT AACAATAAGA AGTGCTGGCC GAGAGATGCA AGGATGAGGT TGATGAAACA TGATGTCAAT CTTGGTAGAA GTATCTTCTG GGAAATGAAG AACCGTCTTC CTCGGAGCCT TACAACTTTT GAATGGGAGA ATAGCTTTGT CTCTGTGTAC AGCAAGGACA ATCCTAATCT GCTGTTCAGC ATGTGTGGAT TTGAAATCCG CATACTTCCG AAAGCCAGAA TGAGTCAAGA AGCTTTCAGC AACATAGGGG ATGGTGTATG GAATCTGCAG AATGAACAGA CAAAAGAGAA GACTGCAGTT GCTTTTCTGC GGGTTGATGA AGAACAAATT AAGGTGTTTG AGAATCGTGT GAGGCAAATT TTGATGTCGT CAGGGTCGGC CACATTTACC AAAATCACCA ATAAATGGAA CACAGCTTTG ATAGGTCTCA TGACTTACTT TCGTGAAGCC ACTCTACATA CGCCAGAGCT CATTGATCTG TTGGTTAAAG GTGAAAGTAA AATCCAAACA AGGATTAAGA TTGGGCTGAA TTCAAAGATG CCTAGTCGAT TTCCTCCTGT TGTTTTTTAC ACCCCGAAGG AACTCGGTGG GCTTGGAATG TTGTCTATGA GTCATATACT GATCCCAGAA AGTGACCGTC GGTACAGCAG ACAAACAGAC GTTGGTGTTA CCCACTTTAG GAGTGGAATG AGTCAAGAAG AGGATCTGAA GATACCCAAT CTTTACCGTT ACATACAGCC ATGGGAAAGT GAGTTTATTG ATTCACAGCG TGTGTGGGCA GAGTATGCTT TAAAGAGGCA GGAAGCACAA GCCCAAAATA GACGTCTTAC ACTTGAGGAT CTGGAAGACT CCTGGGATAG GGGAATTCCG CGTATAAACA CGCTTTTTCA GAAGGATAGG CACACATTAG CATATGATAA AGGTTGGAGA GTCCGGACTG ACTTCAAGCA GTACCAAGTC CTGAGACAAA ATTCTTTCTG GTGGACTCAT CAGAGGCATG ATGGGAAGTT GTGGAACCTG AACAATTATC GAACTGATGT AATCCAAGCT CTTGGAGGTG TTGAGAGTAT TCTTGAGCAC ACCTTATTTA AGGGAACATA CTTCCCAACA TGGGAGGGTC TTTTCTGGGA GAAGGCATCT GGGTTCGAGG AGTCAATGAA ATATAAGAAG CTGACGAATG CACAGAGGTC TGGTCTGAAC CAGATTCCTA ATAGAAGATT CACGCTCTGG TGGTCGCCAA CAATCAATCG AGCAAATGTT TATGTCGGTT TCCAAGTGCA GTTGGATCTA ACTGGAATAT TCATGCATGG AAAGATTCCT ACCCTTAAGA TATCTTTGAT TCAGATTTTT CGTGCCCATA TGTGGCAAAT GATCCACGAG AGCGTTGTTA TGGATCTTTG CCAAGTATTG GACCAACATA TGGATGAGAT GGGGATAGAT ATTGTGCAGA AGGAAACAAT TCATCCAAGG AAGAGTTACA AAATGAATAG CTCTTGTGCT GATATTCTTA TGTTTGGTGC CTCTAAATGG CCAATGTCGA AGCCAAGTCT GGTGACCGAC TCGAATGATA TGTTTGATCA GAAAGCTAGT AAGAAGTATT GGATAGATGT ACAGCTTCGA TGGGGAGATT ATGACTCTCA TGATATTGAA CGTTACACTA GGGCCAAGTT CATGGATTAT ACATCGGATA ACATGTCTAT CTATCCATCT CCAACAGGCG TGATGATTGG GATTGATTTG GCATACAATG TGTATTCTGC TTTTGGTAAT TGGTTCCCTG ATTCAAAATC TTTGATTGCT AAAGCAATGA ACAAGATTAT TAAGTCAAAT CCGACATTAT ATGGGTTGAG AGAAAGGATA AGGAAAGGTT TGCAGTTATA CTCATCTGAG CCTACAGAGC CAAATTTGTC ATCTCAAAAC TATGGCGAAA TATTCAGCAA CCAGATAATA TGGTTTATTG ATGATACCAA CGTCTATCGT GTGACAATGC ATAAGACATT TGAAGGAAAT CTGACAACAA AGCCAATCAA TGGTGCAGCT TTTATTTTCA ATCCAAGAAC TGGGCAGCTA TTCCTGAAGG TTATGCATAC AAGCGTTTGG GCTGGTCAGA AGCGTCTTGG TCAGCTTGCA AAATGGAAAA CTGCTGAAGA GGTTGCTGCA CTTGTGCGGT CTTTCCCCGT TGAAGAACAG CCAAAACAAG TTATTGTGAC TCGTAAGGGA ATGTTGGACC CCATTCAGAC TACCATGAAG GATTTTCCCA ACATTGTTAT CAAGGGAAGC GAACTGCAGC TTCCATTCCA GGCTTGCCTG AAGATTGAGA AATTTTGTGA TCTGATTTTG AAAGCTACTG AGCCGCAGAT GAACCTCTTC AATATCTATG ATGATTGGTT GACGAGCATA TCTTCTTACA CTGCCTTCTC AAGACTCATT CTCATCCTTC GTGCTCTTCA TGTCAACAAT GAGAAGGCTA AGATGTTACT GAAGCCCGAC AAGTCTGTTG TCACTGAGAC ACATCACATC TGGCCTTCTC TCACTGACGA CCAATGGATG AAGGTGGAGG TTGCTCTTAA AGATCTCATC CTTTTTGACT ACGCCAAAAA AAATAACCTG AATATATCAG CTTTGACACA GTCAGAGATA AGGGATATTA TTCTTGGAGC TGAGATTACT CCACCGTCTC AACAAAGGCA ACAAATAGAT GAGATTAATA AACAGGCCAA AGAAGTGAGA CAGCTTAGTG CAGTGACAAC AAGGACCACT AATGTTCATG GTGATGAACT CATTGTCACC ACCATTAGTC CCTATGAACA GTCTGCATTT GGTTCCAAAA CAGATTGGCG AGTGCGTGCA ATCTCAGCTA GTAACCTCCA CCTTAGGGTC AACCACATTT ATGTGAACTC ATATGACGTA AATGAAACAG GATACACCTA CATAATGCCA AAGAACATCT TGAAGAGATT CATACGCATA GCAGATCTTC GTACTCAGAT TGCTGGGTAT ATGTATGGTA TAAGTCCTCT TGATAATCCT CAGGTCAAGG AAATACGATG CGTTGTGATG GTGCCACAGC GGGGATCACA CCAGCAAGTT CACTTGCCTT CATCTCTTCC TGAGCATGAT TTCTTAAAGG ATTTTGAGCC CCTGGGATGG ATGCACACAC AGCCTAATGA GCTTCCTCAA TTGTCGCCAC AAGATGTTAC ATCACATGCA CGTTTTCTGG AGAATAACAA GCAATGGGAC AGAGAAAAAT GTATCATCTT GACTTGCAGT TTCACTCCTG GTTCATGTTC TTTGACCTCA TATAAGCTGA CGGAAACTGG ATATGAATGG GGACGTCTCA ACAAGGACAG TGGCAGCAAT CCCCAAGGCT ATCTTCCGAC ACACTATGAC AAGGTTCAAA TGCTATTGAG TGACCGGTTC CTTGGGTTTT ACATGGTTCC TGATAACGGA CCATGGAACT ATAACTTTAT GGGGGTGAAG CACACAGAGA GCATGAAATA TAGTGTGAAA CTCGGAAACC CCAAGGAGTA CTATGACAAT GAGCATCGAC CCACTCATTA TCTGGAGTTC AGCAATATGG AAGAGGATAG AAACTTCAGC GAGAGAGATC GTGAGGACTG TTATGCTTGA 
Length6450
Protein Sequence
Protein Residue
Map Locationscaffold_7: 12155902.. 12163073
Download Sequence
A.thaliana
AGI-codeAT4G38780.1
DescriptionPre-mRNA-processing-splicing factor
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
6.48074 Ahg483465
7.14143 Ahg480003 Homeodomain-like superfamily protein
7.28011 Ahg909961
7.54983 Ahg477143 Wall-associated kinase family protein
8.24621 Ahg478143 PHD finger family protein
13.8924 Ahg915663 Disease resistance protein (TIR-NBS-LRR class)
15.2971 Ahg938022
17.7482 Ahg313276 transmembrane receptors;ATP binding
17.8885 Ahg927447 zinc finger (C3HC4-type RING finger) family protein
18.3848 Ahg313345 ureide permease 5
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression