Detail



ID : Ahg928230

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|928230|scaffold_300687.1
Sequence
TTCTGAACAT ATAAAACAGC AATGGCTGCT CAAAGAAAAG ACGGTCATCC ATCGCTTTAC TATCACGGTC CGCTTGGTCC TGCACCGCTG CATCGCCAAG ACTGTAGCCA CTGGTGTCTT CCCGGTGTTC CTGACACGTG GAACGAGCTC TTCTATGCAT TATTTATGAA ACAAGAAGCT CCTTGTTTCC GCCTATACTA TTGGGCCCTA AGCCCGAGTT CTTCTTGTTT CCGGCTTCGT AAAGAAACAG AGAACCGATT GTTTTTGGTC TCCTGAGTAT ATTTTACTGT ATATTT 
Length296
Protein Sequence
Protein Residue
Map Locationscaffold_3: 2300904.. 2301199
Download Sequence
A.thaliana
AGI-codeAT3G06080.2
DescriptionPlant protein of unknown function (DUF828)
TAIR curator summaryEncodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Alias[TBL10][TRICHOME BIREFRINGENCE-LIKE 10]
Gene coexpression
MR
MR Locus Description
1 Virus1994
1.41421 Virus0653
2.23607 Ahg927394
4.69042 Ahg348323 Transcription initiation factor IIF, beta subunit
4.89898 Ahg947151
5.2915 Ahg940077
6.48074 Virus0121
7.14143 Virus3180
8.48528 Ahg922976
8.83176 Ahg485631
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression