| Annotation |
|---|
| Description | jgi|Araly1|934754|scaffold_402742.1 |
| Sequence |
TTTGTTTCTT CAACGGAGAA GATGGATACC AGAGAAATCA ATGGTTTTTC CTCCGCCGCG AGATCGATAT CTCTTCCTAC GCAGCCAAAT TACAGTAGCA AACCTGTTCA GGAGGCGTTG AAACACTTGG CATCTATCAA CCTTAGAGAA TTGTGTAATG AGGCAAAAGT TGAGCGATGT CGTGCAACAA GAGACTTGGC TAGCTGTGGA CGATTTGTTA ACTATGTGTT GAATCCATGT GGGCATGCCT CCTTGTGCTC AGAGTGTTGT CAGAGGTGTG ATGTTTGTCC TATCTGTAGA AGTACGCTAC CAAAATACGG AGATAGACTT CGGCTTCGTC TCTATTATGA GTGTGTTGAA GCTGGTTTGA TTTCCCGAAC ACATGAAGAG GCGTCTCAGG ATTCAGATGA GGATGAAGAT CAATTGGCAG CTGATGTTCA TCGTCTTTAT TCTCTGTTTG ATGTTGCCAT GAACAACAAT TTGATATCTG TGGTTTGCCA TTATATCACC AATGTCTGTA TGGATGAGAC AGCTGTATCT AGTGATCCGG TCATTGCTTT CTTGCTGGAT GAAGTTGTTG TCAAGGATTG GGTCAAGCGT ACATTCCGGA GCATCTTAGC TGAGCTTCAA GAAATATATA GTCTTGAAAC AAAAGAGATG CAAGTGTGGT TAGATAAACT CCTAAGGTGT TCCAAACAGG TGGCTGGCAT ATGTAGTGTG CTCGAAGTTA TGGAATCAGC TTTTAACGGT TCTGTTTCAT CTCAGCTTCA AGATGTGCAG AAGCTTAGGG AGAACATTGG TAAAACGAAG CAGCATCTGG ACATAATGGT CTGGTGCATC AGACACGGAT TTCTGGAGGA TGTGAGCTCT CGATATTCTA ATTTCACATC GTGGAATGCC CTTGTAGGAG AAAGAAAATC AAATGCAATT AAGCGTGCAT GGCCTGATGC TGTAGACCAG TCTTCAGATT GCAATGTACA GAGTGCTTCC CTCTTTATTG AAGATGCTTT ACAAAATCTT GAGAGAGAGC CAGAGTACAG TCAGGAAATA GGGGCCGACC TAGAAGTTGG ATGTTTACTG AAGGATAAGA GATCATTTCT TAGGTCCAAA ATAGAGGGAA CTTCAGGATC TTATCCATTT GAGAATCTTA GAACTGCTGC GGACATGCTC TTTTTACATG GCGGTTCAGA TTTGGTTGTT GCGAAGCAAG CAATTTTTCT TTACTACCTG TTTGATCGGC ATTGGACTAC CCCTGAAAAA TATTGGAAGC ACATTATAGA TGATTTTGCT GCTACCTTTG GCATAACCAG GCATTCATTG TTGGAGTCTT TTGTATTTTA TCTTCTCGAT GATCATTCTG AGGAGGCACT CCAGGAAGCT TGTAGGATTC TTCCTGAAAT ATGTGGTCCA GAAACCTACC CCAAAGTTGC GCAAGTCCTG TTAGAAAGGG AAAACCCTGA AACAGCTCTT ATGGTCTTGC GTTGGTCTGG TCGTGATGGT GTATCAGAAT TGGTTTCAAT TGGTGAAGCT GTCACAGCTG TTCGTGTGAG AGTGGAATGT GGTCTTTTGA GTGAAACATT CACATACCAA AGGACACTTT GCTTGAAAGT AAAGGAAAAT AATTTGAAAA ATGGAGCTGT GAAACATGTG TCTGATGATC TAGACAGCTG GAGTTGGACG GAATGGATGG AGATACTTGT CAATGAATTC TGCTGTCTTT CTATTCGGAG AAACTTGGTT GATCGAATCA TTGAGTTACC GTGGAACCCA GAAGAGGAGA AATATCTGCA CAGATGCTTA TTAGATTCTG CAACTGATGA CCCCTCATCA GTTGTGGGTA GTCTTTTGGT TGTCTTTTAT CTTCAGCGCT ACCGTTACAT CCAGGCATAC CAAGTCGATC TTAGGCTCCA GAAAATTGAA GAGGCTTTCG TATCCGACAA TCAAATTGGG GAAGAAGTTA TGTTCAGAAT GCGATCACAG AGTCATTGGA GAAAAGAGTT AGTTGATAGA GCCATAGATA TACTTCCAGT TATCCAGCAG CAGCAAGTTA GATCTGGAAA ATTTTCTGAG ATGGAAGATG CCTCTGAAAG TGTTTCTGAA GGAGCAAAAA ACTCTGATCT TCCTGATGCA CCTGACATGA TTACTTCTTC AGTTCCCTTT GCTGCAACTA ATTCCGTTTT TCTCCAAAGG GCTAACAATG CCAGCGCTAG AGAGCCAGTG GCTAAAAATG GCAGTCCTTT TCAACCCGGT CATTTGATAG GAAATGCTTC CCTTGATCTT TCCCATGGAA GGTTATTTAC AAACGCAAAT AGAGGACAAA AGAGTGAAGT TAGAAGCATA ACCAAGGCTC TGAAATTCGG TGAAATGTCA ACTCCGTTCA AAGATCTAAA TAGAACTCGT GGGAACAGCC AGCTCAAAGG AAAAAGGACC GAAGAAACCT CTCCAGAGAC AAATGTTGAT AGATTCATGG AGAATAATAT GAGCTCCCCT TATCTTCGCC GAGTCACAGC TAACAATCCT GTGACAGTGA AATCTAGCAG CAACCATCTC AATGGATCTG CACAGAAACC GGAATCCACC TTTTTTGGCA CAAGGATGCA AGCAGACAAA GATAACTTTG TTGATTTGGA TGATCCAATG GACATGTCTT CGAGCTTGAA GGACAACAAC AATGTCTTGG CCACTGAGAG CAGAAATAAC AGTGGCGGAT TGAGGTGGCG GTCAGATGAA ACAAGCGATG AGGACGATGA ACTGAAGTTG GGCATGGAAC TGACTAATTT CAGTTCCATG CCGGTGAAGG GAAGGAGGAG ACGTAGATTT GCGGCAAGAT GAAATAAAAC AAACACTCAA AA |
| Length | 2852 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 18353445.. 18358414 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G39810.1 |
| Description | ubiquitin-protein ligases |
| TAIR curator summary | A novel protein with a RING finger motif near the amino terminus. Negative regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress. |
| Alias | [ESD6][HOS1][EARLY IN SHORT DAYS 6][HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg320642 | RNA binding (RRM/RBD/RNP motifs) family protein |
| 6.48074 |
Ahg479648 | dentin sialophosphoprotein-related |
| 8.83176 |
Ahg476537 | |
| 8.88819 |
Ahg927583 | Mitochondrial ribosomal protein L37 |
| 9.16515 |
Ahg927433 | SUPPRESSOR OF AUXIN RESISTANCE 3 |
| 9.79796 |
Ahg944513 | Class I glutamine amidotransferase-like superfamily protein |
| 11.4891 |
Ahg476449 | Eukaryotic translation initiation factor eIF2A family protein |
| 11.4891 |
Ahg927133 | transcription coactivators |
| 14 |
Ahg474208 | polymerase gamma 2 |
| 16.4317 |
Ahg497180 | Protein of unknown function (DUF2361) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|