| Annotation |
|---|
| Description | jgi|Araly1|936663|scaffold_500854.1 |
| Sequence |
CGTGACTCTC ACCGGAAACC ATGACGGACA GCCATTCCTT CAATAGCATC TCCCTCAGCG GCCGCGGCGG AACGAACCCT GGACTTCTTA AAATCAATTC TGGAGGAATT CAATGGAAGA AACAAGGTGG TGGAAAAGCT GTGGAAGTTG ATAGATCTGA TATTGTAAGT GTTAGTTGGA CAAAAGTTAC AAAGAGTAAT CGATTGGGAG TCAAAACCAA AGATGGATTG TACTATAAGT TCGTTGGATT TAGAGATCAG GATGTTCCTA GTCTGAGTAG CTTTTTCCAA AGTTCTTATG GAAAAACACC GGAAGAGAAG CAATTATCGA TTAGTGGTCG TAATTGGGGT GAGGTGGATT TACATGGGAA TACACTAACC TTTTTGGTTG GATCAAAGCA AGCTTTTGAA GTATCTTTAG CTGATGTTTC ACAGACTCAG ATTCAAGGGA AAGATGATGT TACTCTGGAG TTTCATGTTG ATGATACTGC TGGTGCTAAT GAGAAAGACT CGTTGATGGA GATTTGTTTT CATATTCCTA GTTCCAACAC CCAGTTTGTT GGTGATGAAA ACCGTCCACC TTCTCATGTT TTCAATGACA CAATCGTTGC AATGGCTGAT GTTAGTTCTG GAGTTGAGGA CGCGGTCGTC ACATTTGATA GTATTGCAAT CCTCACACCC AGGGGTCGGT ACAGTGTGGA ACTTCACCTT TCTTTCTTAC GTTTGCAAGG ACAAGCTAAT GACTTTAAAA TCCAATACAG TAGTGTTGTC CGGTTGTTCT TGCTTCCAAA GTCAAACCAA CCACACACGT TTGTTGTTAT CTCTCTTGAC CCACCAATCC GGAAAGGTCA GACAATGTAC CCCCACATTG TGATGCAGTT TGAGACAGAC ACCGTCGTCG AAAGTGAACT GTCAATTAGT GATGATCTTA TGAATACAAA GTTCAAGGAC AAGCTTGAGC GATCATATAA GGGTCTCATT CATGAAGTAT TCACCACCGT GTTGCGTTGG CTGTCTGGTG CAAAGATCAC TAAACCTGGG AAGTTCCGAA GTTCCCAAGA TGGGTTTGCA GTGAAATCAT CTCTTAAGGC AGAAGATGGG GTTCTTTATC CACTCGAGAA GGGATTTTTC TTCTTACCTA AACCTCCAAC GCTTATACTT CATGATGAGA TTGACTATGT TGAGTTTGAA AGGCATGCTG CTGGTGGTGC TAATATGCAT TACTTTGATC TTCTCATAAG ACTGAAAACT GATCATGAAC ATCTGTTCCG TAACATTCAA AGGAATGAGT ATCATAATCT CTATACCTTC ATAAGCTCCA AGGGTTTGAA GATTATGAAC CTTGGAGGTG CGGGAACCAC AGATGGTGTT GCTGCTGTTC TTGGGGATGA TGATGATGAT GATGCTGTTG ACCCTCATCT TGAGCGTATC AAAAACCAAG CTGCTGATGA GAGTGATGAG GAGGACGAAG ACTTTGTTAT GGGTGAGGAT GATGACGGCG GTTCACCAAC TGATGATTCT GGCGAGGACG ACTCTGATGC TAGTGAAGGC GGTGGAGGAG AGAAAGAGAA ATCTATCAAG AAGGAACCCA AGAAAGAGGC TTCGTCATCG AAAGGATTGC CCCCTAAAAG AAAAGCGTCA GCCGCAGACG AAGGCAGTAG CAAGAGGAAA AAGCCGAAGA AGAAGAAGGA TCCCAACGCA CCAAAAAGAG CGATGTCTGG TTTCATGTAC TTTTCCCAAA TGGAAAGAGA TAACATAAAG AAGGAACACC CAGGAATAGC ATTTGGAGAG GTGGGAAAGG TGCTTGGAGA TAAGTGGCGC CAAATGTCTG CTGAGGAAAA AGAGCCTTAT GAAGCCAAAG CTCAAGTCGA CAAGCAGCGA TACAAGGATG AGATTAGTGA TTACAAGAAC CCTCAGCCGG TGAACGTGGA CTCAGGAAAC GAGTCTGACA GTAACTAAAC TTTGATGCCC CAATATTCTC |
| Length | 1980 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 4583177.. 4586799 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G28730.1 |
| Description | high mobility group |
| TAIR curator summary | encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC. |
| Alias | [ATHMG][HMG][NFD][SSRP1][high mobility group][NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg348567 | dentin sialophosphoprotein-related |
| 2 |
Ahg481315 | RNA recognition motif and CCHC-type zinc finger domains containing protein |
| 2.23607 |
Ahg492634 | Alkaline phytoceramidase (aPHC) |
| 2.82843 |
Ahg492116 | small ubiquitin-like modifier 1 |
| 3.74166 |
Ahg473739 | |
| 10.9545 |
Ahg485730 | UDP-glucuronic acid decarboxylase 1 |
| 13.2665 |
Ahg491814 | Regulator of Vps4 activity in the MVB pathway protein |
| 16.6132 |
Ahg923636 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 17.9444 |
Ahg483858 | |
| 20.3961 |
Ahg934616 | phosphorylethanolamine cytidylyltransferase 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|