| Annotation |
|---|
| Description | jgi|Araly1|940793|scaffold_601337.1 |
| Sequence |
TTTTGTAGAA TTTTTCCATC AACCATGACG ATTATCACTG TACAGTCCTC GTATAGTCCT TCTCGGGTTC CGGTTATAAA GACCGCGAAT TTCAATCAAA TTCCGTCGTG GGTTTCTCTG AAATCGAGTA CTTCTTCTGT TAAAATCTCG CATAAGCAAG GACAAGTGGA GAATCTTCAT TTGGTTTCGT TGTCGAAGCA TGGGAAGCTC AACGAAGCAT TTGAGTTTTT CCAAGAAATG GATAAGGCTG GTGTCTCCGT TAGCTCGTAT TCTTACCAAT GTCTCTTTGA GGCTTGCAGA GAATTGAGGT CTTTATCTCA TGGGAGACTC TTGCACAATC GCATGCGCAT GGGTATCGAG AATCCTTCTG TGCTTCTTCA GAACTGTGTG CTACAAATGT ACTGTGAGTG CGGGAGCTTG GAAGACGCAG ATAAGCTGTT CGATGAAATG TCTGAGTTAA ATGCAGTTTC TCGCACAACG ATGATATCTG CTTACGCCGA ACAAGGTCTT TTGAATAAAG CTGTTGGTTT GTTCTCGAGG ATGCTAGAGT CAGGCGACAA GCCTCCTTCT TCCATGTATA CTACACTCTT GAAATCTTTG GTAAACCCTA GGGCTTTAGA CGTTGGTAGA CAGATTCATG CTCATGTTAT ACGTGCTGGG TTATGTAGCA ACGCATCTAT AGAGACCGGG ATCGTGAACA TGTACGTTAA ATGTGGTTGG TTAGTGGGTG CTATGAGAGT GTTCGATCAG ATGGCAGTGA AGAAACCAGT GGCTTGGACG GGTTTGATGG TAGGTTACAC TCAAGCTGGT AGAGCAAGAG AGGCTTTGAA ACTATTTGTG GATTTGGTCA CGGAAGGTGT CGAATGGGAC AGTTTTGTGT TTTCAGTTGT TCTTAAAGCG TGTGCTTCTC TTGAGGAGCT TAGATTTGGC AAGCAAATTC ATGCCTGTGT CGCTAAGCTT GGACTGGAAT CTGAAGTCTC GGTTGGAACT CCACTCGTTG ATTTTTACAT CAAATGTTCC AGCTTCGAGT CTGCTTGTCG TGCATTTCAA GAAATCCGAG AGCCAAACGA TGTTTCCTGG AGCGCAATCA TTTCCGGTTA CTGTCAAATG AGCCAATTTG AGGAGGCTGT TAAAACCTTC AAGTCTTTGA GAAGCAAAAA TGCGGTGGTT CTAAATTCAT TCACATATAC TAGCATATTT CAAGCATGTT CAGTACTTGC AGATTGCAAC ATCGGTGGCC AAGTCCATGC AGATGCTATA AAAAGAAGTC TGATTGGATC TCAGTATGGA GAAAGCGCTC TGATTACGAT GTATTCAAAA TGTGGATGCT TAAATGATGC ACATGAAGTC TTTGAGTCAA TGGACAACCC CGACATTGTT GCATGGACGG CTTTTATATC AGGTCATGCT TACTATGGAA ATGCCTCTGA AGCTTTGAGA TTGTTTGAGA AAATGGTGAG TTGTGGTATG AAGCCAAACT CCGTTACATT TATTGCGGTT TTAACCGCCT GCAGCCACGC AGGCCTAGTT GAACAGGGAA AGCATTACTT GGACATGATG CTTCGAAAAT ATAACGTGGC TCCAACAATT GATCATTATG ATTGTATGAT CGACATTTAT GCCCGTTCAG GACTATTAGA AGAAGCTCTC AGATTTATGA AGAATATGCC TTTTGAACCT GATGCAATGA GCTGGAAATG CTTTCTAAGT GGCTGTTGGA CTCATAAGAA TCTTGAACTG GGAAAAATTG CTGGTGAAGA ACTTCGCCAA CTCGATCCAG AAGATACAGC TGGATATGTG CTACCCTTTA ATCTGTATAC CTGGGCTGGA AAATGGGAAG AGGCTGCTGA GGTGATGAAA CTAATGAATG AGAGGATGTT AAAGAAGGAA CTGAGCTGCA GCTGGATCCA AGAAAAGGGT AAGATTCATC GGTTTATAGT GGGTGATAAA CACCATCCAC AAACTCAGGA GATCTATGAG AAGCTTAAGG AGTTTGATGG TTTCATGGAA GGTGATATGT TTCAGTGTAG TATGACAGAG AGAAGAGAAC AGCTTCTTGA TCATAGTGAG AGACTTGCCA TTGCATTTGG GCTGATATCT GTGAATGGCA ATGCCCGTGC ACCTATTAAG GTGTTCAAGA ATCTTCGGGC ATGCCCAGAT TGTCATGAGT TTGCAAAGCA TGTATCTTTG GTTACAGGAC ATGAAATCGT CATCCGAGAT TCTAGAAGGT TTCACCATTT CAAGGAGGGA AAGTGTTCTT GCAACGATTA CTGGTGACTG GTTATCTTTA GTGTCTG |
| Length | 2297 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 5150923.. 5153218 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G13270.1 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| TAIR curator summary | Encodes RARE1 (Required for accD RNA Editing 1), a trans-factor essential for C-to-U editing of the chloroplast accD transcript. RARE1 carries 15 PPR (pentatricopeptide repeat) motifs, an E/E+ and a DYW domain (C-terminal tripeptide). |
| Alias | [RARE1][REQUIRED FOR ACCD RNA EDITING 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.9282 |
Ahg933117 | topoisomerase II |
| 7.93725 |
Ahg354257 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 8.48528 |
Ahg470389 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 9.16515 |
Ahg488768 | TCP-1/cpn60 chaperonin family protein |
| 9.32738 |
Ahg470090 | Ribosomal RNA adenine dimethylase family protein |
| 12.1244 |
Ahg471265 | Pentatricopeptide repeat (PPR) superfamily protein |
| 13.6748 |
Ahg492444 | |
| 14.9666 |
Ahg473458 | |
| 15.8745 |
Ahg928421 | |
| 23.3666 |
Ahg919721 | RAB GTPase 11C |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|