| Annotation |
|---|
| Description | jgi|Araly1|943541|scaffold_604085.1 |
| Sequence |
GGAAAGATCG AGGAGTCATC AATGGTGACG GATGATAGCG ACTCCTCTGG AAGAATCAAG TCTCATGTAG ATGATGATGA AGAAGATAGG CTCGAGGGTT TGGAGAACAG ACTAAGTGAG CTTAAAAGGA AAATTCAAGG AGAAAGAGTT AGGTCTATTA AAGAGAAAAT TGAGGCTAAT AGAAAGAAAG TGGATGTTCA TGTTTCTCCC TTTTCATCTG CTGCATCGAG CCGGGCTACC GCAGGGGAGA ATGGAAATAG CAATGTGTTT TCTTCGAGAA TGGAAATACC ACTCTGCAAG TTAAATGGTT TTTCTCATGG GGTGGGAGAT AGAGACTATG TTCCTACTAA GGATGTTACA GCAGCAAGTG TCAAGCTTCC GATTGCTGAG AGAATACCGC CTTACACTAC CTGGATATTT CTGGACAGAA ATCAAAGAAT GGCGGAAGAT CAGTCTGTGG TTGGTCGAAG ACAAATTTAC TATGAGAGAC ATGGTGGTGA GACACTGATA TGCAGCGATA GTGAGGAAGA ACCAGAACCT GAGGAGGAAA AACGTGAATA TTCCGAGGGT GAAGACTCTG TTATATGGTT GATTGGGCAG GAGTATGGCA TGGGTGAGGA AGTGCAGGAT TCTCTTTGCC AGTTTCTCAG CGTAGATGCT TCAGACATTC TGGGAAGATA CAATGAACTC AAGTTGAAGG ATGAGCAGAA TACTGAGGAC TTTTCTAATT CCGGATTCAA GCTTGGAATA TCTCTGGAAA AGGACCTTGG TGCAGCTCTA GATTCTTTTG ATAATCTTTT CTGCCGCCGT TGCTTGGTAT TTGACTGTCG TCTGCATGGA TGTTCTCAGC CTTTAATTAG TGCTAGTGAA AAACAGCCTT ATTGGTCTGA TTATGAAGGT GATAGGAAGC CCTGCAGCAA TCATTGTTAC CTCCAGGTTG AGGTCAAGGC GGTCAGAGAA GTACCTAAAG CAGAAGAGAA AGCTTCAAAA GAGGAATGCA GCAAGGCTAT CTCCTCAGAT GACCCTCATG ATGCTGCTAC TGGTGTCAAT CTGCAAGTTG AGAAGACTGA TATTGGTTTC AAGAATTTAG ATTCATCCTC TGGTGTAGAA CAAGAGCATG GAATTAGGGG AAAGCGTGAG GTCCCGAATC TCGAAGACTC CAATGATCTG CCTAATTTAT CAAACAAGAA ACAGAAGACC ACAGCCTCAG ATACAAAAAT GTCACTTGTT AATTCTACCC CTAGCTTAGA TCAGGCATTT GATAGCTCAA AGGGTGATCA AAGTGAAACA GTTGAGACCA ATAATGTAAA CAGAGACTCA GGAGCTGATT CAAAACAAGT AGCTGAACCT CTTCCAGACA TTTTGGTCCA TGATGGTGGT TCCTCCGTTT GTCAGCCAGA CCATGGTAGT GGAAATGGAT CAATAATCGT TGGAGAAATG TCTGAGAAAA TTCAACCATC TACAGAGTGG AACCCTATCG AGAAGGATCT TTACTTAAAG GGAGTCGAAA TCTTTGGGAG AAACAGCTGT CTTATTGCAA GAAACCTACT TTCTGGCCTG AAGTCATGCC TAGATGTGTC CAGTTACATG CGTGAAAACG AAGTTTCAGT TTTTCGAAGA TCTAGCACCC CAAATTTGCT GTTGGATGAT GGCAGGACTG ACCCAGGGAA TGATGATGAT GAGGTGCCTC CAAGGACAAG ATTGTTCCGT AGAAAAGGTA AAACTCGAAA GCTAAAATAC TCTACAAAGT CTGCTGGTCA TCCATCTGTC TGGAAAAGAA TAGCCGGTGG CAAAAACCAG TCCTGTAAAC AATACACACC ATGTGGATGC CTGTCAATGT GCGGAAAGGA TTGCCCTTGT CTAACCAATG AAACTTGTTG CGAGAAATAT TGCGGGTGCT CAAAAAGCTG CAAAAATCGC TTCCGAGGAT GTCATTGTGC AAAGAGTCAA TGCAGAAGTA GGCAGTGTCC CTGCTTTGCT GCTGGCAGAG AATGTGATCC AGATGTTTGC AGAAATTGCT GGGTTAGTTG TGGAGATGGT TCTCTCGGCG AAGCACCAAG ACGCGGAGAA GGGCAATGCG GAAACATGAG ACTTCTCCTG AGGCAACAAC AGAGGATACT ATTGGGAAAG TCTGATGTTG CTGGATGGGG TGCTTTTCTA AAGAACTCGG TCAGCAAAAA TGAGTATCTC GGAGAATACA CTGGCGAATT GATCTCACAC CGCGAGGCGG ATAAGCGTGG GAAAATATAT GACCGGGCAA ATTCGTCCTT CCTTTTTGAC TTGAATGATC AGTACGTCCT CGATGCTCAA CGCAAAGGAG ACAAGCTGAA ATTTGCCAAT CACTCGGCAA AACCCAATTG CTATGCTAAG GTGATGTTTG TAGCAGGAGA TCACAGGGTC GGCATTTTTG CAAACGAACG AATAGAAGCT AGCGAGGAGC TTTTCTATGA CTACAGATAT GGACCAGACC AAGCACCAGC TTGGGCTCGC AAACCTGAAG GCTCCAAGAA AGATGATTCA GCCATTACTC ATCGTAGAGC CAGAAAGCAT CAATCTCATT GATCATTGCT GGCTGACAAA GGT |
| Length | 2583 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 22503294.. 22508570 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G02020.1 |
| Description | SET domain-containing protein |
| TAIR curator summary | Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG. |
| Alias | [EZA1][SDG10][SWN][SET DOMAIN-CONTAINING PROTEIN 10][SWINGER] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg929889 | pre-mRNA-processing protein 40C |
| 4.69042 |
Ahg489950 | translation elongation factor Ts (EF-Ts), putative |
| 6.16441 |
Ahg470503 | Helicase protein with RING/U-box domain |
| 6.32456 |
Ahg481838 | pumilio 1 |
| 9.16515 |
Ahg481710 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain |
| 9.94987 |
Ahg473945 | calcium-dependent lipid-binding family protein |
| 10.583 |
Ahg927404 | Protein of unknown function (DUF1712) |
| 12.3288 |
Ahg489030 | calmodulin 6 |
| 13.4164 |
Ahg486087 | GroES-like zinc-binding alcohol dehydrogenase family protein |
| 13.4907 |
Ahg341309 | Sterile alpha motif (SAM) domain-containing protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|