Detail


ID : Ahg929889

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|929889|scaffold_302346.1
Sequence
ACTGTTACTC GATACCCCCA ATGGAAGGGG ATAATACAAC GGAGCCGCCG TACACGACGG CGGCATCTTC GGGACAGAGT ATCTTCGTCC GTCCTCCTCT AATTGCTCCA GTATTGGCTA CTGCTTCGAA TGTCTCTCAG TCGGAGCAAC CCTCTATGTC TATTGCTAGT ACAGGTTTTG TCTCTCAGTC AGTTCCATCT TCTGTTGCTG CACAATGGGG TTCTAATGCA GCAGCCTCCT CAAATGTTAA TCCCATACCT CAAGCTTCGC CCATGCTAGC AAATGCACCT TTTGGTCGAC CAGGAACACT CGCCCCTCCT GGACTAATGA CATCTCCGCC TGCTTTTCCT GGTTCCAATC CCTTTTCTAC TACTCCAAGA CCTGGGATGT CTACAGGTCC TGCTCAAATC AATCCTGGTA TTCATCCGCA CATGTATCCT CCATATCATT CACTGCCTAC AATGCCTGGA ACTCCTCAAG GAATGTGGTT GCAGCCTCCT CCTATGGGTG GTATTCCCAG GGCACCTTTT CTTTCACATC CTACTACTTT TCCTGGTTCA TATTCATTTC CAGTTCGTGG AATCTCTCCT AACCTACCAT ATTCTGGTTC TCAACCGCTT GGTGCCATTC CTATGGGAAG TGTTGGCAAT GTTCATGCAT TACCAGGTCA TCAGCTTGAT ATATCTCCCG GGCAAAAGAC AGAAGCACTC TCAGGAATCG ATAACAGAGC TGGTTCTCAA CTAGTTGGAA ATCAGTTAGA TGCCTGGACT GCACATAAAT CAGAAGCAGG AGTTGTTTAT TATTATAATT CCGTTACAGG GCAATCAACC TACGAAAAGC CTCCTGGTTT TGGAGGGGAG CCTGATAAAG TGCCTGTGCA GCCAATTCCA GTTTCTATGG AGGATTTACC TGGGACGGAT TGGGCTCTTG TGTCCACAAA TGACGGCAAA AAGTATTACT ACAACAATAA AACAAAGGTC AGCAGCTGGC AAATTCCTGC AGAAGTGAAA GATTCGGGGA AGAAACCGGA GGAGAGGGCT ATGGAGAGTG TAGCATCTGT GCCAAGTGCT GATTTCACTG AAAAGGGTTC TGATCTATCA AGTTTGAGCG CACCTGCTAT CAGCAATGGT GGCCGGGATG CTGCATCTCT AAAAACTACA AATTTTGGTT CGTCGGCACT GGATTTGGTT AAAAAGAAAC TACATGATTC TGGAGTGCCC GTCTCATCTA CGACAACATC TGAAGCAAAT GGTGGTAAAG CAAGTGAGGT CACACCAAGT GGAGAAAGTG GAAATGGTAC GGGTAAGATA AAAGATGCTC CTGGAGCTGG GGAACTTTCT GATTCTTCTT CAGATTCCGA AGATGAAGAT AGTGGACCAT CAAAGGAAGA GTGTTTTAAA CAGTTTAAGG AAATGCTGAA AGAGAGAGGA ATAGCACCGT TTTCTAAATG GGAGAAGGAA TTGCCAAAAA TTATCTTTGA CCCTCGCTTT AAGGCAATAC CAAGTCATTC TGTTAGAAGA TCTTTATTTG AGCAGTATGT AAAGACACGC GCTGAGGAAG AACGTAAGGA AAAGCGTGCT GCTCATAAGG CAGCTATTGA AGGATTCAGG CAGTTGCTGG ATGAAGCGTC TACGGACATC CATCAACACA CTGATTATCG TGCTTTTAAA AAGAAATGGG GGAATGATCT CCGGTTCGAA GCACTTGAGC GGAAGGAGCG GGAGGCTTTG CTGAATGAAA GGGTCCTTTC TTTGAAACGA ACTGCTGAAC AAAAGGCGCA AGAAATTCGC GCAGCTGCTG CCTCTGATTT CAAGACAATG CTACGCGAAA GAGAAGTATC ATTAAATTCA CATTGGTCCA AGGTGAAGGA TAGTCTGAGA AATGAACCAA GATATAGATC TGTTGCACAC GAGGACAGGG AGGTTTTTTA TTATGAGTAC ATTGCGGAAC TAAAATCTGC ACAAAGGGGA GATGATCATG CGATGAAAGC CAGAGACGAA GCGGACAAAC TGAGGGAACG GGAGCGTGAG TTGCGGAAAC GCAAAGAAAG AGAAGTGCAA GAGGTGGAAA GAGTACGACA AAAAATTAGA AGGAAAGAGG CAAGCTCCTC TTATCAAGCT TTGTTAGTGG AAAAAATCAG AGACCCTGAG GCATCCTGGA CGGAATCTAA GCCAAAACTT GAGAGGGATC CTCAAAAACG AGCCTCTAAT CCAGACTTGG ATCCTGCTGA TAAAGAGAAG CTATTCCGAG ACCACATAAA GACATTATAT GAGCGATGTG TTCATGACTT CAAAGCTCTT CTAGTTGAAG CCTTGTCATC TGAAGCTGCT TCTCAACAAA CAGAAGACGG AAAGACTGTG CTTGATTCTT GGTCAGCAGC TAAACAAGTA CTGAAACCCG ATATCAGGTA CAGCAAGATG CCAAGGAGAG ATAGGGAAGT CTTATGGCGC CGATATGCTG AGGATATCTC GAGGAAACAG AAACAAGAAA ACTATCAGGA GGAGAAACAA AGAGATTATA AGACCTAAAA ATCCTAAACC TATAGGCT
Length2548
Protein Sequence
Protein Residue
Map Locationscaffold_3: 8113292.. 8119154
Download Sequence
A.thaliana
AGI-codeAT3G19840.1
Descriptionpre-mRNA-processing protein 40C
TAIR curator summaryBinds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries.
Alias[ATPRP40C][PRP40C][pre-mRNA-processing protein 40C]
Gene coexpression
MR
MR Locus Description
2.23607 Ahg943541 SET domain-containing protein
7.34847 Ahg943587 Ribosomal RNA processing Brix domain protein
8.48528 Ahg472652 gamma-adaptin 1
10.8167 Ahg888770 F-box family protein
10.9545 Ahg487351 E3 ubiquitin ligase, putative
14.1421 Ahg474886 methyltransferases;copper ion binding
15.0997 Ahg487302 DNA/RNA helicase protein
15.8745 Ahg898366 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases
19.0788 Ahg482441 maternal effect embryo arrest 22
20.347 Ahg492572 pyrimidin 4
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression