| Annotation |
|---|
| Description | jgi|Araly1|952338|scaffold_6000006.1 |
| Sequence |
CGTTTTATCA AGAATCGACT ATGGCTTCTA CTACCTTACT TCCTTCTACT TCAACCCAAT TTCTTGATCG AACTTTCTCA ACTTCATCTT CTTCTTCGAT ACCTAATCTT CAATCTTTAT CGTTTTCCTC CACACTCTGC AGCAAGAAAC TAATCCCTTG CTCTGTTTCT TCCTCCGTCA TCAAAAAATC TTACGTTTCG TCTTCTCTCC CATCCCCGAC TTACAAACAA CCCTCTTGGA AGAAACTATG TAACGATGTC GCCAATTTGA TCCCGAAAAC GACTAATCAG AGTCCAACAT TAAACCTGGT ACAGAGAACC GCCGCCACTG TTTTAGACGC GGTGGAGAAC ATGATGATCT CCCACGAACG CCGCCGTCAT CCGCTTCCTA AAACGGCGGA TCCCGCCGTC CAAATAGCCG GAAACTTCTT CCCGGTACCG GAGCAACCAG TCGTGCATAA CCTTCCGGTG GCTGGAACAG TACCAGATTG CATTCAAGGA GTTTACGTCA GAAACGGAGC GAATCCGCTT CACAGACCAA TCTCCGGGCA CCATTTATTC GACGGAGACG GTATGGTTCA CGCTGTTCGG TTTGATAACG GTTCGGTTAG CTACGCTTGT CGGTTTACCG AAACAAACCG GTTGGTTCAA GAACGAGAAT TTGGTCGCCC TGTTTTCCCC AAAGCAATTG GAGAGCTTCA CGGACATTTA GGAATCGCCA AGCTTATGCT CTTCAACACC CGCGGGCTAT TCGGGTTAGT CGACCCGACC CAAGGACTCG GTGTCGCTAA CGCCGGTTTA GTCTATTTCA ATGGTCATCT CTTAGCAATG TCTGAAGACG ATTTACCGTA CCATGTCAAA GTCACTCAAA CCGGAGATTT AGAAACTTCG GGTCGGTACG ATTTCGACGG TCAGTTAAAA TCCACAATGA TAGCCCACCC GAAGATCGAC CCGGAAACCC GAGAGCTATT CGCTTTAAGC TACGACGTCG TTTCAAAGCC TTACCTAAAA TACTTCAGAT TCACATCCGA CGGCGAGAAA TCACCAGACG TCGAGATTCC GCTTGATGAA CCAACGATGA TCCACGATTT CGCAATTACT AAGAATTTCG TAGTGATCCC AGACCAACAA GTGGTTTTCC GATTGCCGGA GATGATCAGA GGTGGTTCTC CGGTGGTTTA CGACGAGAAG AAGAAATCAA GATTTGGGAT TTTGAATAAA TACGCGAAAG AGGCTTCGTC GATTCAATGG ATCGAAGTAC CAGATTGTTT CTGTTTTCAT CTCTGGAACT CTTGGGAAGA ACCAGAAACA GACGAAGTTG TCGTGATTGG ATCATGCATG ACGCCACCTG ATTCGATTTT CAACGAACAC GACGAAACGC TTCATTGTGT TTTGTCGGAG ATAAGGCTAA ACCTGAAAAC AGGGGAATCA ACACGTAGAC CGGTTATTTC CGAACAAGTT AATCTCGAAG CCGGTATGGT AAACCGGAAT TTATTAGGTA AAAAAACACG GTTTGCTTAT TTGGCTTTAA CCGAACCGTG GCCTAAAGTG TCCGGTTTCG TTAAAGTGGA CTTATCGACC GGAGATATTC AAAAGTATAT ATATGGAGAT GGGAAATACG GAGGAGAGCC TCTGTTTCTG CCTTCCGGTG ACGGTGAAGA AGACGGTGGT TACATTATGG TGTTCGTTCA CGACGAGGAG AAGGTGAAAT CGGAACTCCA AATCATAAAC GCCGTTAATA TGAAGCTTGA AGCTACCGTT ACGCTTCCGT CGAGAGTGCC TTATGGTTTC CACGGAACGT TCATCAGTAA GGAAGATTTA TCGAAGCAAG CTTTGTGTTA ATTTTAGTTA TGCGTATATA CT |
| Length | 1862 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_60: 42974.. 44835 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G78390.1 |
| Description | nine-cis-epoxycarotenoid dioxygenase 9 |
| TAIR curator summary | Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. |
| Alias | [ATNCED9][NCED9][NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9][nine-cis-epoxycarotenoid dioxygenase 9] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg495778 | |
| 8.48528 |
Ahg485382 | HXXXD-type acyl-transferase family protein |
| 11.6619 |
Ahg491894 | L-tyrosine decarboxylase |
| 13.9642 |
Ahg925596 | |
| 14.4914 |
Ahg909562 | metacaspase 7 |
| 16.7332 |
Ahg889815 | Disease resistance protein (TIR-NBS-LRR class) family |
| 17.3205 |
Ahg478752 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| 20.2485 |
Ahg493202 | terpene synthase 03 |
| 21.6333 |
Ahg923953 | Protein of unknown function (DUF581) |
| 21.9089 |
Ahg943766 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|