| Annotation |
|---|
| Description | jgi|Araly1|313836|fgenesh1_pm.C_scaffold_1002616 |
| Sequence |
ATGGCTGAAT CCAACGGCAA GGGTTCCCAC AATGAGACTT CCTCAGGAGC AGTCTTGAGT GATCCTGGAC ATGTTCTAGG GGACAACGAT GATGAGGAAT ATGAGGACAA CAGCAGGGGT TTTAACCTTG GATTCATCTT TGGAAATGTT GATAACTCTG GCGACTTGGA TGCTGATTAC CTTGATGAGG TAATCTGTTT AACGCTTTCA GACGCCAAAG AACATCTTTC TGCATTGGCA GATAAGCTGG GTTCATCTCT ACCAGATATA AATTTATTGG CAAAATCAGA ACGTACAGCA AGTGATCCAG CTGAGCAAGT TTTTATTTTT CATTTAACTT CTAATTATGA TAGAAAAGCT GAGGATGCTG TTGATTATGA GGATATTGAT GAAGAGTATG ATGGGCCCGA AGTTCAAGTA GTTAGTGAGG AAGATCATCT ACTACCAAAA AAGGAGTATT TTTCGACTGC AGTTGCTTTG GGTAGTTTAA AGTCAAGAGC TTCTGTGTTT GATGATGAAG ATTATGATGA GGAAGAAGAA CAAGAGGAGG AGCATGCACC AGTTGAAAAA TCTTTTGAAA CTGAAAAGAG GGAACCAGTT GTCTTAAAGG AAGACAAGGC CTTGGAGTAT GAAGAGGAGG CTAAAGAGGA TCATATGGAC ACCGAAGATG TCCAGGAGGA GGAGGTGGAT GAGGTATTGG ATGGTACATT GGATGACAAA GGCGCTACCC CACTGCCTAC GTTGTATGTC GAAGATGGTA TGGTCATCTT ACAGTTCTCC GAGATATTTG CTATCCATGA GCCTCCACAG AAACGGGACA GGAGAGAAAA TAGATATGTC ACTTGTAGAG ACAAATACAT ATCTATGGAT ATTTCTGAGC TTGTTGAAGA CGATGAGGAG ATACTCCTGA AGAGCCATGG TAGGATTGAT ACTCTTGTGA AACAAGCTGA TCTAATTCAG CTGGATGTTC CCTTTCCAAT TAGAGAGGGT TTACAGCTGG TAAAAGCTAG CACAGTGGGT GGTATCACAC CAGAATCAAG AGAATTTACA AAGCTAGGAA GGAATTCATG TATCATGGGT GAACTGTTGA AGGAAGACTT AATAGATGAT AATTCATCTC TGTGCCAATC TCTATTATCA ATGGAAGTTT TTCCTCTTGA CCAGCATGAA TGGGAACATC GGATTCTTTG GGAACATTCT CCTGAAATCA GTGGTAATTC TGGTGAGGTC TTTGAACGTG GACTTGAGCC GGAAGCTATG CTGGTTGAAG GAACAAATGC AGAGACTGAA GAAGAAAACT TGAATGTGAT GAACTCTAGA GAGAAAGTTC AAGCTGACGA TAATATGCCT GTGCCTTTTT CTGCCAATCT GTTGGAGTCT TTTGGCTCAA GAGGTTCCCA GTCTACTAAC AAAAGTAGAC ATCATCCACA ACTGCTAAGG TTAGAATCCC AGTGGGATGA GAATCATCTT AGTGAAAATG ATGAATCTGG AGTGAAGAAG ATAAAGCGAC TTGAAAACGA CGCCCTTGGG CGCTTTAGCA GACTTGTATT ACGAGAGAGG GATTCGGGGG ATGAGGCATG GTTAGATAGT ATAATATGGG ACTCAAATAA AGAGTTGAGC AGATCTAAAC TAATTTTTGA TCTTCAAGAT GAGCAAATGG TCTTTGAAAT TTTGGATAAT GAGGAAAGCA AAAATCTTCA ACTTCATGCT GGAGCTATGA TTGTATCCCG ATCTTCAAAA TCCAAGGATG AAACCTTTCA AGAAGGCTGT GAATCAAATT CTGGGTGGCA ATTCAATATT TCCAATGACA AGTTTTATAT GAATGGGAAA AGCTCTCAGC AACTGCAAGC AAATACTAAT CAATCCGGTG CTCATAGTTT GAGAGTTTTT CATTCAGCAC CAGCGATTAA ATTGCAGACG ATGAAGAGTA AATTGAGCAA TAAAGACATC GCAAATTTTC ACCGGCCCAA AGCTTTGTGG TATCCACATG ACAATGAGCT AGCCATCAAA CAGCAAGGAA AGTTACCCAC CCGAGGATCC ATGAAAATTA TAGTTAAGAG CCTGGGGGGT AAAGGAAGCA AGCTACACGT TGGCATAGAG GAATCTGTCT CTTCTTTAAA AGCCAAGGCT TCTAGAAAGC TAGATTTTAA GGAAACAGAA GCAGTGAAGA TGTTCTGTAT GGGAAAGGAA CTTGAGGATG AAAAGTCTCT TGCTGCACAA AATGTTCAAC CAAATTCCTT GGTTCATCTT ATACGTACGA AAGTACATAT GTGGCCATGG GCGCAGAAGC TACCTGGCGA AAATAAATCT TTGAGACCTC CTGGGGCATT CAAAAAGAAA TCTGACTTAT CGACTAAAGA TGGCCATGTT TTCTTGATGG AGTACTGTGA GGAGAGGCCG CTGATGCTCA GCAATGCAGG AATGGGTGCA AATTTGTGCA CATATTATCA GAAGACATCC CCAGAGGATC AACGTGGCAA CTTGCTGCGC AATCAAAGTG ACACCTTAGG GAATGTGATG ATTCTAGAAC CTGGGGACAA GTCTCCTTTC CTTGGGGAGA TACACGCTGG TTGCAGTCAG TCATCTGTTG AAACAAACAT GTATAAAGCA CCTATTTTTC AGCAGAGATT GCAGTCAACA GATTACTTGT TGGTCCGGTC TCCTAAAGGA AAGCTCTCTC TAAGGCGTAT TGACAAGATA GTTGTTGTCG GACAACAGGA ACCTCGCATG GAAGTAATGT CTCCTGGATC AAAGAATCTA CAGACTTATT TAGTGAACAG AATGTTGGTT TATGTGTACC GAGAATTTTT GAAGCGTGGT GGGGGAGGCC ACCCAATTCC TGCAGATGAG CTGTCTTTCT TATTTTCTAA CTTGACAGAT GCAATCATCA AGAGGAATAT GAAGAGGGAT AAAAATGGCC AGTCTTATTG GGCCAAAAAA CCTGGTTTAA AAGATCCAGC TGAGAATGAG CTGAAAAAGC TTGTAGCACC AGAGCATGTA TGTTTCTCCT TTGGGGACAT TTCATTGGTA TGTTCTTATG AGAGTATGCT AGCTGGGCTG TATCGGCTCA AACATTTAGG GATCACCCGG TTTACATTGC CAGCCAGCAT ATCAACTGCA TTGGCTCAGC TCCCAGACGA AGCTATTGCT CTTGCTGCTG CATCACATAT TGAGCGGGAG TTGCAGATTA CTCCATGGAA TCTGAGCAGT AATTTTGTTG CTTGTACAAA TCAGGTGGGC ATCACTTATC TATATTTGGG AGACAGAGCA AATATAGAGC GGTTGGAAAT TACTGGGGTT GGTGATCCCT CTGGACGGGG TCTAGGATTC AGCTACGTCA GAGCTGCGCC AAAAGCACCA GCTGCAGCCG GGCATATGAA GAAAAAGGCA GCAGCCGGCC GTGGAGCCCC AACTGTCACT GGTACAGATG CTGATCTTCG CAGATTAAGC ATGGAAGCAG CTCGAGAGGT TCTTATCAAG TTTAATGTCC CTGATGAGAT AATTGCCAAG CAAACTCGAT GGCATCGTAT AGCTATGATA CGGAAGCTAT CAAGTGAGCA GGCTGCATCC GGTGTTAAGG TTGACCCTAC AACCATAGGC AAGTATGCTC GTGGCCAGAG AATGTCTTTC CTGCAGATGC AACAGCAGGC CCGAGAAAAG TGTCAGGAGA TTTGGGATAG ACAGCTTTTG TCCCTTTCAG CTTTTGATGG TGATGAGAAT GAAAGCGAAA ATGAGGCGAA TAGTGACTTG GACTCCTTTG CCGGAGATCT GGAAAATCTA CTTGATGCTG AGGAAGGTGG GGAGGGGGAA GAATCTAATA TGTCTAAGAA TGACAAGTTG GATGGAGTAA AGGGTCTCAA GATGAGACGG CGGCCATCTC AAGTTGAGAC AGACGAAGAG ATTGAAGATG AAGCTACTGA ATATGCAGAG TTATGCCGAC TGCTGATGCA AGATGAGGAT CAGAAGAAGA AAAAGAAGAA GATGAAAGGT GTGGGAGAGG GAATGGCATC CTTTCCTCCA CGACCCAATA TAGCTTTTCA GACAGGTGAA CCTGTAAGAA AGGCCAATGC CATGGACATG AAACCTACTG CCATCCAACC TGATGCATCG TTCTTTGTAA ATGAGAGCAC CATCAAAGAC AACAGAAATG TTGATACTAT TATAAAGACC CCCAAAGGTA AACAGGTAAA AGAGAGCAGC AATACTTTGG GCCAGCTGAA GAAGGTCAAA ATACTGAACG AAAACCTAAA GGTATTCAAG GAAAAGAAAT CGGCGAGAGA GAACTTTGTT TGTGGAGCCT GTGGTCAGCA TGGACACATG AGAACCAATA AACACTGCCC AAGATACAGA GAAAATACAG AATCACAACC TGAAGGCATA GATATGGATA AGTCTGCCGG AAAACCAAGC TCTTCAGAAC CATCAGGTCT GCCCAAGCTG AAACCTATTA AGAACAGCAA GGCTGCGCCA AAAAGTGCAA TGAAAACTTC TGTAGATGAA GCTCTGAAGG GAGATAATTC AACTTCCAAA ACTGGGGGTC TCCCTCTGAA GTTTAGATAT GGTATCCCCA CTGGAGATTT GTCAGATAAA CCTGTTTCTG AAGCTCCAGG AAGTTCTGAG CAAGTGGTGG TGTCTGACAT GGACATTGGG ACTAAGTCCA CATCTAGGAT CAGCAAACTG AAGATTTCAA GTAAGGCAAA ACCTAAAGAA TCAAAGGTTG AATCTGAAAG ACCTTTGCAT TCATTGATGC CTACATTTAG CAGAGAGAGA GGGGAGAGCG AATCACACAA GCCTTCTGTC TCTGGACAAC CCTTGTCTAG TACAGAGAGA AATCAGGCAG CCTCAAGCAG GCACACTATT TCTATCCCGC GGCCATCATT AAGCATGGAC ACAGATCAAG CTGAATCGCG TAGGCCTCAT CTTGTGATAC GACCGCCGAC AGAAAGAGAA CAGCCTCAGA AGAAACTTGT TATAAAACGT TCAAAAGAGA TAAATGATCA TGACATGAGT AGTCTTGAAG AGAGCCCCCG GTTTGAGTCC CGGAAAACAA AAAGAATGGC AGAACTAGCG GGTTTTCAGA GGCAGCAAAG CTTCAGATTG TCAGAGAACT CTCTAGAGCG GAGACCAAAA GAGGATAGAG TATGGTGGGA AGAAGAGGAA ATAAGTACGG GAAGACATAG GGAAGTTAGG GTGAGAAGAG ATTATGATGA TATGACTGTA TCAGAAGAAC CCAATGAGAT AGCTGAGATC AGAAGATACG AAGAGGTAAT ACGGAGTGAG AGGGAGGAAG AGGAACGACA AAAAGCCAAG AAGAAAAAGA AGAAAAAGAA ACTGCAACCT GAATTAGTAG AAGGGTATCT AGAAGACTAT CCTCCTCGAA AAAACGATAG AAGATTGTCA GAAAGAGGTC GGAACGTCAG AAGCCGCTAT GTCTCCGACT TTGAAAGAGA TGGTGCAGAG TATGCGCCTC AACCAAAACG ACGCAAAAAA GGAGAGGTTG GCCTAGCAAA CATCTTGGAA CGCATAGTGG ACACACTAAG ACTAAAAGAA GAAGTGTCAC GTCTCTTCTT GAAACCAGTA TCCAAGAAGG AGGCTCCAGA TTATCTTGAT GTCGTGGAAA ACCCGATGGA TCTCTCGACA ATCCGGGATA AGGTACGGAA GATAGAGTAC AGAAACCGAG AACAGTTTAG ACACGATGTC TGGCAGATAA AGTACAATGC TCATCTTTAC AACGATGGAC GTAACCCAGG AATACCACCT TTGGCAGATC AGTTGCTGGA GATTTGTGAT TACTTGTTGG ATGATTATGA AGAGCAGTTA AAAGAAGCAG AGAAAGGTAT AGATCCCAAT GACTGA |
| Length | 5856 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 14307813.. 14317780 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G32750.1 |
| Description | HAC13 protein (HAC13) |
| TAIR curator summary | This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. |
| Alias | [GTD1][HAC13][HAF01][HAF1][TAF1][HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13][HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1][TBP-ASSOCIATED FACTOR 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.60555 |
Ahg472032 | Protein kinase superfamily protein |
| 3.60555 |
Ahg470409 | TRAF-like superfamily protein |
| 8.48528 |
Ahg481564 | DNAJ heat shock N-terminal domain-containing protein |
| 12 |
Ahg473072 | vascular plant one zinc finger protein |
| 12.5698 |
Ahg493091 | Peptidase M20/M25/M40 family protein |
| 18.4391 |
Ahg924306 | CwfJ-like family protein |
| 20 |
Ahg492144 | DEK domain-containing chromatin associated protein |
| 21.9773 |
Ahg488536 | SART-1 family |
| 24.2487 |
Ahg494576 | Homeodomain-like transcriptional regulator |
| 30.4467 |
Ahg942216 | chloride channel D |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|