Detail


ID : Ahg337754

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|337754|fgenesh1_pg.C_scaffold_1004319
Sequence
ATGAGTTCCG GCGCCGGCAG TGGAACAACC AAAGGAGGCA GAGGAAAGCC GAAAGCTACA AAGTCCGTTT CTCGATCGTC TAAAGCTGGT CTTCAGTTTC CCGTTGGAAG AATCGCTAGA TTCCTTAAAG CCGGAAAATA CGCTGAACGT GTTGGTGCCG GTGCTCCGGT TTATCTCTCC GCCGTTCTTG AGTACCTCGC CGCTGAGCTA TTGGAGCTTG CTGGAAATGC GGCAAGAGAT AACAAGAAGA CACGTATCGT ACCACGACAC ATTCAGCTTG CAGTGAGAAA CGATGAAGAG CTTAGTAAAC TTCTTGGAAG TGTAACAATC GCTAATGGAG GAGTTTTGCC TAATATTCAT CAGACACTTC TCCTCATCAA AGTTTGCATG ATATATATTG AACTTAACAA CATAATTAAC ATGTTAATAC AAAATCAGAG GATTGTTGAT GCTACTGATA ACAGCTTGGA TAAGATCAAG CAGCAATTGG AATCGAGGGT TATCGGAACT TGCTTCTGGG ACCTCTTATT CAAGCGAGCT GAAACTGAAG CTTCTACCAT CAGAAGACAT CAGGACAAAA ATCTGAAACC AAGGAGAATC AAATCTACAT CCGCATCTAT GCAAGGTTAG
Length630
Protein Sequence
Protein Residue
Map Locationscaffold_1: 29324464.. 29327780
Download Sequence
A.thaliana
AGI-codeAT1G54690.1
Descriptiongamma histone variant H2AX
TAIR curator summaryEncodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.
Alias[G-H2AX][GAMMA-H2AX][H2AXB][HTA3][GAMMA H2AX][gamma histone variant H2AX][histone H2A 3]
Gene coexpression
MR
MR Locus Description
1 Ahg921217
2.44949 Ahg891079 Transcriptional factor B3 family protein
6.63325 Ahg931486 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
11.4891 Ahg905453
14.1774 Ahg949029
15.1987 Ahg897522 Cullin family protein
18.6548 Ahg942513 ubiquitin-specific protease 17
18.9737 Virus3786
22.8473 Ahg905680
26.1916 Ahg320116 Defensin-like (DEFL) family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression