| Annotation |
|---|
| Description | jgi|Araly1|338526|fgenesh1_pg.C_scaffold_2000625 |
| Sequence |
ATGACGCGTG ACACCCAATT CCCGTGTGAC CCCGCCGGTG TTTGCATGCG ATGCAAATCG ACGCCTCCGC CGGAGGAATC TCTCACTTGC GGCACTTGCG TTACGCCTTG GCACGTGTCC TGCCTTTCTT CACCTCCCAA AACCCTCGAA TCTACTTTAC AGTGGCTTTG TCCTGATTGC TGCGGTGAAA CCGATGCTCT TCCTGTTTCC GGCGTTGCGC CCGGATATGG ATCTGTTGGT TCAGATCTTG TAGTGGCGAT CCACGAGATT GAAGCAGATG ACTCTCTCTC TGCTGAAGAG AAGGCTAAGA AGAGGCAACA GTTACTGAGT GGTAAAGCCG TCGTCCATGA GGATGACGAA GAAGAGAAGA AGAGGAAGAG TAAAGGGAAA AAACCCGCTG ATGAGGATGT GCTATCGCAC TTCCATTGCT CAATCTGTAT GCAGTTGCTA CAGAAACCAG TGTCGACACC ATGTGGGCAC AACGCTTGTT TGAAATGTTT CTTGAAGTGG ATGAGACAGG GAAATCGCAG TTGTGGAACA TGCCGCAGCG TAGTTCCTGA AAGCATGATA AGCAATCCCC ACATCAACTT GTCCATTGTG TCTGCTATTA GGTTGGCAAG ATTATCTCAG AGGGTTGATG CGAGTACTTC TAAAGTTGTT CACGTCATAA GCAATCAAGA CCGTCCAGAT AAAGCATTTA CAACCGATCG AGCTAAGAAA CTAGGGAATG CGAATGCTTC CAGCGGCAAG ATTTTTGTAA CAATCCCACG GGATCACTTT GGTCCTATAC CAGCTGAACA TGATCCTGTT AGGAACCAAG GTGTTTTGGT TGGAGAATCC TGGAAGGGCC GACATACGGC TCGGCAGTGG GGGGTTCACT TCCCACTTGT TTCTGGCATT GCTGGACAAG CTAGTTATGG AGCTCAATCT GTTGTGCTCG CTGGAGGTTA TGAGGATGAT GAGGATCATG GAGAATGGTT TCTATACACA GGAAGTGGGG GAAGAGATCT CAGTACTCGC AACTTAAGGA CTAACAGCGT TCAGGGTTTT GATCAAAAAT TTGAAAAGTC TAATGAAGCC TTAAGACTTA GCTGCAAACT GGGGTATCCT GTTCGAGTTG TCAGGTCTTC CAAGGACATG CATTCTGCAT ACGCCCCTGA GGGAGAATTA CTAAGGTATG ATGGGGTTTA CCGCATCGAG AAATGTTGGA TCAAAGTTGG AGTACAGGGT TCTTATAAGG TCTGTCGTTT CCTGTTTATT AGATGTGACA ATGAGCCAGC TCCATGGACC AGTGATGAGC ATGGAGATCG CCCAAGACCT TTGCCTAATG TTCCGGAGCT TAATATGGCC ACAAACCTAT TTGAGAGAAA AGAAAGTCCA TCATGGGATT TTGATGAAGG TGAGGGTCGT TGGCGATGGA TGAAGCCGCC ACCTGCTAGT AGAAAGGCAG TTAATAATGT TAAGGATCCT GAGGAGAGGA AATTTTTGAG GAAAGCCATG ACATCGGCAC GGTCGAATAC GATGAGGGCA AGACTTCTGA AAGAATTTAA GTGCCAGATC TGTCGGGAAG TGCTGACTAA TCCTGTGACA ACACCTTGTG CTCATAACTT CTGCAAGGCT TGTATAGTAT CCAAATTTGC TGGCAAAACG CTAGTGAGAG AGAGAAGCAG AGGTGGACGA ACACTACGCG CACAAAAGAA TGTCATGAAG TGCCCTTGTT GCCCAACAGA CATTGCTGAA TTTATCCAAA ACCCTCAGGT CAATAGAGAA GTAGCAGACG TCATAGAGAG GCTGAAGAAC CAGGAGGAGG AGGACAACAC AAAACATGTA GATGAAGGTG AATGCTCAGG TACCAGCCAT GAAGAAGAAA CTCTGCCCGT GTCTGGAGAT GCTGAGCAAC CAAAGAAACG GATTAAGTTG GACATTGACG CAGCAGTTTC TGCGACTGTA GTGGAATCTG ACATGAAGTA A |
| Length | 1971 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 4575953.. 4579076 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G57800.1 |
| Description | zinc finger (C3HC4-type RING finger) family protein |
| TAIR curator summary | predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH3/VIM5 cDNA through RT-PCR were unsuccessful and only one Arabidopsis EST is associated with this locus. |
| Alias | [ORTH3][VIM5][ORTHRUS 3][VARIANT IN METHYLATION 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 46.8188 |
Ahg481210 | cis-prenyltransferase |
| 86.0697 |
Ahg936611 | P-glycoprotein 17 |
| 99.8999 |
Ahg888858 | HCO3- transporter family |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|