Detail



ID : Ahg359111

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|359111|fgenesh1_pg.C_scaffold_9000151
Sequence
ATGGCCTATA ACAATTTCAC CCGCCTCGAT GCTCAATCCG CCGCCAAGAA AGCCGTCTCA GTGATCGGAT TAGGTTACTA TCTCTGCTCC GATGTTCGTT TCTCCGCTTG TAAAACTACA CCAGACGGTT CCAGGTTAGT CGAAATCGTC CCGACCCGGA ACCGTGACTT AGTCTTCCCC GGTGGGATCG TCGTTAACAA CGTCTCGAGC TCGATTAAGT GCGATAAAGG CAAACGTACT CGATTACGCT CCGATATACT CTCTTTTAAT CAGATGTCGG AGAAGTTTAA TCAAGATATG TGTCTCTCCG GGAAGATTCC GTCGGGGATG TTTAATAATA TGTTTGCGTT TAGTAAATGT TGGCCTAAAG ATGCGAGCTC TGTGAAGAAT TTAGCTTATT GGTTCATTAG CTTGTATATA CGTGTTGAGA TTGTTAGGAA GCAATTGACT CTACGTGATG AAGTGAAACG TGAGGTTCCT TCTTCTTGGT ACTCATGTAG TTGTTGGAGT GAGTACTAA 
Length519
Protein Sequence
Protein Residue
Map Locationscaffold_1: 3023625.. 3024220
Download Sequence
A.thaliana
AGI-codeAT1G28380.1
DescriptionMAC/Perforin domain-containing protein
TAIR curator summaryThis gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.
Alias[NSL1][necrotic spotted lesions 1]
Gene coexpression
MR
MR Locus Description
1 Ahg910550 MAC/Perforin domain-containing protein
6.48074 Ahg336233 F-box family protein
6.7082 Ahg895347
10.6771 Ahg925799
11.3137 Virus1109
11.3137 Virus2595
15.2971 Ahg922069
15.8745 Virus1400
16.7332 Virus3572
19.7484 Virus1617
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression