Detail



ID : Ahg359258

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|359258|fgenesh1_pg.C_scaffold_74000002
Sequence
ATGTCTGCCG AGAACTCGAG GGAAGTTGGC CGAAAGCTCA GCCTCGGCTT GGAGGCGTCC AGTCGGAAGG AAGCCCTGGA GCGGCTGAAA GCTACTCGGA AAGGAGGACT TCGTAATGGT GGTGGTGGGT GCGAGATTAG GCTGCAAAAG CCTATTTTCG ATACAGTTGG AGATGAGGAG TACCAATCAC TTGTTTCCCG ACGGCGTGAG GAAGATCGCG GGTTTGTGGT GGACGATGGG GATCTGGGAT ATGTCGACGA GGGTGAGGAG GAGGATTGGT CGAAGCCCAG TGGTGGAGCA GAATCGACGG ATGAATCGGA CGATTATGGC GGGAGACTGC AGAGGAGGAA GACTGCAAAG AAGAAGAAGA CGCTTAAGGG TGCGGCTAGT ATTACAGGTG AAGGGAGACT TTCTTCCATG TTCACATGTT CAAGTTTTAA CAAAGGCAAA GAGACTACTG ATAAGGTCAA ATGTTGTGAG AGTATTCTTG ATGAGGTATT AGCTGAGTTT ACTCCTGATG ATATGGATAG AGAAAGGCAT AAGCGAAGGA AACAATCAGC TACTGTGAAT AAGAAATATC TGGTTCATGA TTCACCCTCA ATTGTTACCA TGGAGAAAGA GCAAGTCGTG ACAGAATTTG AAGTCATCCC TCCAAGTGAT GCCAATGAGG TCTTTACATT GAATGCAGCA ATTGATATGA AAGACAAGGA CACGCCTTTA AGCGCCAATG CTGGTTGGAA AGAAGCCATG TGCACAGGTG GAACTGAGAA TGAGGTTCCA CTTGCTTCTG GTTCTGATTC TGAATGCCAA ACGGAAGAAT TTGATTTGGA GGCTGATGGA TCACTTCTTT TTTACATTCT TGACGCTTGC GAGAAGCCTT TTGACGCTAG TATGGGTACA ATATATCTTT TTGGGAAGGT CAAGGTGACT CTCTTCTATT CACTTGTGCT TTTAAGTTGT TCTTCTTCTG GATTAATTGT GGATACACTC TCAGGTCAGT TATTCGTTAA TAGACCTTTC AAAGACACAG CTAAACCGGG ACAGCCTAAT GATATTCCCA AAATGTTTCA GTCATCTAAA ACACTTGTGG AACTTATTGA ATGTGGTGAG ACAGATGCAT GGTTATCCAT GGAGCTCATG TTTCATCTAA ATGTTCTTCC TCTCACTCTC CAGCTTACCA ACATAAGTGG CAATCTCTGG GGGAAAACTC TTCAGGGAGG CAGCGCGCAA AGAAATGAAT TGGTCTTACG ACATACATAC CACTGGAAAA AGTTCATTCT TCCAGACAAA ATATCGCCTC ATATGAAGGA AAGAACAAGC CACAATGTAG ATGATCCGTC TAAGGGCAAC AAAACAAAGA AGGGTCCAGC CTATGCTGGA GGATTGGTCT GGAGCCAAAG AAAGGCTTAT ATGACAAATA TGTGTTGCTT CTCGATTTCA GTAGTCTTTA CCCTGTCTAT TATACAGGAA TATAATATTT GTTTCACGAC TATACCACGA TCAGAAGACG GTGTTCCTCG TTTACCTTCT AGTCAGACTC CTGGAATTCT TCCAAAGTTG ATGGAACATT TGGTCAGTAT AAGGAAATGT GTCAAACTAA AGATGAAGAA GGAAACAGAT CTCAAGTGCC GGGAGCTTGA CATTCGGCAG AAGGCATTAA AGCTCACAGC CAATAGTTTA TATGGATATC TTGGGTTTTC TAATTCAAGA TTCTACGCTA AGCCTTTAGC AGAGCTCATA ACACTACAGG GAAGGGAGAT ACTGCAAAGA ACTGTGGATC TTGTCCAGAA TCATTTAAAC CTAGAGGTTA TTTATGGTGA CACAGATTCA ATCATGATTC ACAGTGGACT AGATAATATC AAAGAGGTCA AAGCCATTGG AGCAAAAGTC ATCCAAGAGG TCAATAAGAA GTATAGATGT CTGAAGATTG AACTTGATTG CATATATAAG AGAATGCTTC TTCTTAGAAA AAAGAAGTAT GCTGCCATCA AGTTGCAGTT CAAGGACGGG AAGATTTGCG AGGACATTGA AAGGAAAGGT GTGGACATGG TTCGTCGAGA TTGGAGCTTG CTCTCCAAGG AAATTGGAGA TTTATGCTTG GCTAAAATCT TGTATGGAGG AATGAGGCAA CGTGGTTATA AAAAAGGTTT CAGTGCTAAG GATACCGTAC CGTATATAAT CTGCTATGAA CAGGGTAGTA CTAGCTTAGC AAGCTCAGCA GGGATTGCCG AACGTGCTAG GCATCCTGAT GAGGTGAAAT CAGATGACAA CAGATGGTTG GTTGACATAG ATTACTACTT GTCACAGCAG ATTCATCCGG TGGTATCTCG TTTATGCGCA GAGATTCAGG GCACAAGTCC TGAGAGGTTA GCTGAGTGTT TAGGACTTGA CCCATCAAAG TATCGAAGCA GATCAAACGT TACTACGTGT AGTGATCCTT CTACATCCCT CTTGTGTGCT ACGAGCGATG AAGAAAGATA TAAAAGCTGT GAGCCGTTAG TATTAGCATG CCCTAGCTGC TCAGCTGCTT TCAACTGTCC ATCGATTACT ACCTCAGTTT GTGCGTCGAT CAGTAACAAA TCTGAAACAG AGGAATCTGA TTCTATATTC TGGCTTAAAC TGCGTTGCCC GAAATGCGAA GCAGAAGGTA GCACGAGAAG AATATCCCCT GCAATGATAG CTAACCAGTG TGACGATGAG TCTTGCAAAT ACACGACACG CAGCCCCAAC TTTCGTCTGC TCGGTGACTG TGAACGGGGA ACCGTTTGCC CAAACTATCC TAACTGTCGT GGAACCCTCT TAAGAAAGTA CACTGAAGCA GACTTGTACA GGCAGCTATC ATACTTTTGC CACATCTTAG ACACACAATG CTCTCTAGAA AAGGTTTCTA CTTTCAACCT CATTGCTTCT AATCAGATGG ATGTTGGTGT CAGAATTCAA GTAGAGAAAG CAATGACGAA GATAAGACCT GCGGTTGAGT CAGCAGCATC CATGGCTCGA AGTATACGAG ACCGGTGTGG GTACGGATGG CTGCAACTGA CAGACATAGC CATTTGA 
Length3057
Protein Sequence
Protein Residue
Map Locationscaffold_74: 11318.. 18504
Download Sequence
A.thaliana
AGI-codeAT5G67100.1
DescriptionDNA-directed DNA polymerases
TAIR curator summaryEncodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.
Alias[ICU2][INCURVATA2]
Gene coexpression
MR
MR Locus Description
1 Ahg327035 DNA-directed DNA polymerases
2 Ahg916277 DNA-directed DNA polymerases
45.6946 Ahg931984
97.6729 Ahg327036
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression