Detail



ID : Ahg471477

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|471477|fgenesh2_kg.1__1431__AT1G13220.1
Sequence
TTTTGGGAAA TTAGGGTTCC AAAAATTTCG AACTAATGTT CACGCCACAG AGAAAACCGT GGATGTCACC GGCGATGACG CCGAGAAGCG AGAAGCATAA AATCGGCGGT GTTACTAACC CTAGAAACGC TGATAGAAAG GGAAAGGCGG TTGCTTTTAG CGATGACCTA GTGATATCGA CTCTCCCACC GCCTCCGATT GGAACACTGA CCGGAGAAGG CGTTTCTCGA GGTTACACTG ATGATATGGA TATGGGTGAT TGGAGAAGGT TTAGGGAAGT GGGTTTGTTG AATGAGGCTT CAATGGAGAA GAAAGATCAA GAAGCTCTTC TTGAAAAGAT CTCCACACTT GAAAAAGAGT TATATGGCTA TCAGCACAAT ATGGGGCTTC TTCTCATGGA CAACAAAGAG TTGGTTTCAA AGCACGATCA ACTAAATCAG GCATTGCAAG AAGCTCAAGA AATCCTTAAA AGGGAACAGT CGTCACATCT GTATGCGTTG ACGACTGTCG AACAACGTGA AGAAAACTTG AGAAAAGCTT TGGGTCTGGA AAAGCAATGT GTGCAAGAGC TTGAGAAGGC TCTTCGTGAA ATTCAAGAGG AGAATAGCAA GATGAGGCTG ACTTCTGAAG CTAAATTAGT TGAAGCTAAT GCTTTGGTTG CTAGTGTTAA CGGGAGATCT TCAGACGTGG AAAACAAGAT TTACTCTGCC GAAAGCAAGC TCGCAGAGGC AACTAGAAAG AGCTCCGAGC TGAAAATGAG ATTGAAGGAA GTGGAGACTC GTGAAAGTGT CCTGAAACAA GAGCGGCTTT CATTTGCTAA AGAGCGAGAA TCATATGAAG GGACTTTCCA CAAGCAAAGA GAGTACCTTA ATGAATGGGA GAAAAAGCTT CAAGAAAAGG AAGAAATAAT GACTGAGCAG AAGAGAAGCC TGAATCAAAG AGAGGAAAAG GTTAATGAAA AAGAAAAGAA ACTGAAGCTG AAAGAAAAAG AACTTGAAGA ATGGGATAGA AAGGTTGATT TGTCTATGTC GAAGTGTAAG GAAACTGAAG AGGACATAAC GAAACGATTG GAAGAATTGA CTACAAAAGA GAAAGAAGCT CACACACTCC AGAGCACGCT AGTGTCAAAG GAGAATGAGT TACGAGCCTT TGAAGAGAAG CTCATTGCTA GAGAAGGGGT AAGTTTAAGG GTATAGCTTT TGTAGATTGT AGTTGTTGAA CATTTTTATA CACTGGAAAT ATAAATATTT AATGAAAGTA ACAGCATTCT CATAATAGGA ATACTGTTAT GCACTGGATA TC 
Length1302
Protein Sequence
Protein Residue
Map Locationscaffold_1: 5245211.. 5247154
Download Sequence
A.thaliana
AGI-codeAT1G13220.2
Descriptionnuclear matrix constituent protein-related
TAIR curator summaryEncodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.
Alias[CRWN2][LINC2][CROWDED NUCLEI 2][LITTLE NUCLEI2]
Gene coexpression
MR
MR Locus Description
1 Ahg347316
9.48683 Ahg477337 ARM repeat superfamily protein
18.1659 Ahg480564 GCIP-interacting family protein
24.2693 Ahg476030 Prolyl oligopeptidase family protein
29.2404 Ahg494453 RING/U-box superfamily protein
31.3847 Ahg917537 Calcineurin-like metallo-phosphoesterase superfamily protein
43.6119 Ahg331729
48.4974 Ahg491547
53.3854 Ahg930999 Ribosomal protein S12/S23 family protein
55.857 Ahg470979 NPK1-related protein kinase 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression