| Annotation |
|---|
| Description | jgi|Araly1|485842|fgenesh2_kg.5__1834__AT3G54420.1 |
| Sequence |
CTCAACAAAA TCAAAATGTT GACTCACACA ATTTCTAAAG CCATCTCTTT GGTAACCATT CTATTAGCTC TACAAGCTTT CTATATCACA ACAAAGGCTC AAAACTGCGG TTGTTCGTCA GAGCTATGCT GTAGTCAGTT TGGCTTTTGC GGTAACACTT CAGACTATTG TGGTGTAGGT TGCCAACAAG GGCCTTGTTT TGCTCCTCCT CCTGCTAATG GTGTGTCTGT GGCTGAGATT GTTACGCAAG ATTTTTTCAA TGGAATCATT AGTCAAGCCG CGTCTAGTTG CGCAGGCAAT AGTTTTTACA GTCGAGGAGC TTTTCTTGAG GCCTTAGACT CATATTCTCG TTTCGGTAGA GTTGGATCGA CTGATGACTC TAGACGTGAG ATCGCAGCGT TCTTTGCTCA TGTTACGCAT GAAACTGGAC ATTTCTGCTA CATAGAAGAG ATAGACGGAG CCGCAAAGGA TTACTGCGAC GAGAATTCAA CGCAATATCC ATGCAATCCT AACAAAGGCT ATTACGGCCG CGGACCGATC CAACTCTCTT GGAATTTCAA CTACGGGCCA GCTGGAACCG CAATTGGTTT TGACGGCCTC AATGCACCGG AAACAGTAGC CACAGATCCG GTCATATCCT TCAAGACCGC CTTGTGGTAC TGGACAAATC GGGTTCAGCC TGTTCTCTCT CAAGGTTTTG GTGCAACAAT CCGAGCCATT AACGGTGCTT TAGAGTGCGA CGGGGCCAAC ACAGCCACCG TTCAAGCTAG AGTTCGTTAC TACACGGATT ATTGTCGTCA ACTTGGCGTT GATCCTGGAA ACAACCTCAC TTGCTAACAA AAACATCTAT TTCTTTGTAT ACATA |
| Length | 865 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 16070115.. 16071332 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G54420.1 |
| Description | homolog of carrot EP3-3 chitinase |
| TAIR curator summary | encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. |
| Alias | [ATCHITIV][ATEP3][CHIV][EP3][CHITINASE CLASS IV][homolog of carrot EP3-3 chitinase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.79583 |
Ahg937805 | phytosulfokine 4 precursor |
| 5.47723 |
Ahg918888 | Chitinase family protein |
| 5.47723 |
Ahg923732 | PLAC8 family protein |
| 6.7082 |
Ahg492803 | FAD-binding Berberine family protein |
| 7 |
Ahg928623 | exocyst subunit exo70 family protein H4 |
| 7 |
Ahg492227 | Galactose mutarotase-like superfamily protein |
| 7.4162 |
Ahg494916 | receptor-like protein kinase-related family protein |
| 7.74597 |
Ahg494895 | Glutamate receptor family protein |
| 7.74597 |
Ahg939938 | Protein of unknown function (DUF3133) |
| 8.83176 |
Ahg482660 | don-glucosyltransferase 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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