| Annotation |
|---|
| Description | jgi|Araly1|487159|fgenesh2_kg.6__293__AT5G03800.1 |
| Sequence |
TCATGTCCAC CGTTAATCAT CACTGTATCC TCAACTTTCC TCATATCCCA CCTTCAATTC CTCCGAATCA TCGTCCCAAA CTTCATTCTT CTCTTTCCCT CTATCGAAAA CCCGAACGCC TCTTTACCAT CTCTGCGTCT CTGTCGCTTT CACCAGCAAC CATCCATGAG TGTTCTTCTT CCTCATCATC TTCTTCTCCA TCGTTCGAGA AGGAAGAAAG GGAAGAGATT GAATCTATTG TTGATGGGTT TTTCTATCTG CTTCGATTGT CTGCTCAATA CCAGGACGTC GAGGTAACAA AAGCTGTACA CGCTTCGTTC CTTAAGCTCA GAGAAGAAAA AACCCGTCTT GGAAATGCCC TAATCTCTAC ATATCTCAAA CTTGGTTTCC CTCGTGAAGC TTTTCTCGTC TTCGTGTCTC TTTCTTCACC AACGGTGGTT TCTTACACAG CTCTTATCTC GGGTTTCTCA AGGTTAAACC TTGAAATTGA GGCTCTTAAG GTTTTCTTCA GGATGAGAAA AGCAGGTATT GTCCAGCCGA ATGAGTATAC TTTCGTAGCG ATTTTGACTG CTTGCGTGAG AGTTTCGCGA TTCTCGCTTG GGATTCAGAT TCATGGATTG ATAGTTAAAT CCGGGTTTTT GAATTCTGTG TTTGTTGGTA ATTCGTTAAT GAGTTTGTAT TCAAAGGATT CTGGGTCGTC GAGTGATGAT GTGCTTAAGT TGTTCGATGA AATTCCTCAC AGAGATGTGG CTTCTTGGAA CACTGTGATT TCGAGTTTAG TGAAAGAGGG AAAGTCTCAT AAAGCTTTTA ATTTGTTTTA TGAGATGAAC AGAGTCGAAG GACTTGGAGT TGATTGTTTT ACGCTTTCAA CGCTTTTGAG CTCTTGCACT GATTCGAGTG ACTTGTTGAG AGGCAGAGAA CTCCATGGTC GTGCAATTAG AATAGGGTTG ATGCAGGAAT TGAGTGTCAA TAACGCTTTG ATTGGGTTTT ATTCTAAATA TGGGGATATG AAAAAGGTAG AGAGTTTGTA CGAGATGATG ATGGTGCAAG ATGCCGTTAC TTTCACGGAG ATGATCACTG CTTACATGGC ATTTGGAATG GTGGATTCTG CTGTTGAGAT ATTCGAGAAT ATAACTGAGA AAAACACTAT TACCTATAAC GCGCTCATGG CTGGGTTCTG TAGAAACGGC CATGGCTTGA AGGCACTGAA ATTATTCACT GAAATGCTGC ATAGAGGCGT TGAGTTGACG GATTTCAGTT TAACAAGCGC TGTGGACGCT TGTGGTTTAG CTTCAGAGAA GAAAGTAAGC GAACAGATTC ACGGGTTTTG TATTAAGTTT GGATGTCTTT TAAACCCTTG TATCCAGACT GCATTGCTTG ATATGTGCAC AAGGTGTGGA AGGATGGCAG ATGCTGAGGA GATGTTTGAC CAATGGCCTT CTAATCTCGA TAGCTCGAAG GCAACGACGT CAATACTCGG TGGTTACGCT CGGAATGGCT TACCTGATAA GGCTTTATCG CTATTCCATC GCACTCTCTG TGAAGAGGAG TTGTTTTTAG ATGAAGTTTC GTTGACTTTG ATTCTTGCGG TCTGCGGGAC ATTAGGGTTT CGGGAAATGG GTTATCAGAT CCATTGCTAT GCTCTTAAAG CTGGCTACTT TTCTGATGTA TGCTTGGGGA ATTCTTTGAT TAGCATGTAC TCGAAATGTT GTGACTCAGA TGATGCCATA AAGGTTTTCA AGACTATGCA AGAACATGAT GTTGTTTCTT GGAACAGCTT GATTTCTTGC TACATCCTTC AAAGAAATGG TGACGAGGCA CTGGCTCTAT GGTCGAGGAT GAATGAGGAA GAGATCAAGC CTGACATGAT CACGCTCACT CTTGTTATTT CTGCATTTCG GTATACAGAG TCAAATAAGC TTAGTAGCTG CCGTGATCTG TTTCTCTCCA TGAAGACTAT CTATGACATT GAACCAACGA CTGAACATTA CACTGCATTC GTCCGTGTTC TGGGTCATTG GGGTCTTCTT GAAGAAGCGG AAGACACAAT AAACTCGATG CCGTTTCAGC CCGAGGTCTC TGTTTTGAGA GCTCTGCTTG ATAGCTGCAG AGTCCATTCA AACACAAGCG TTGCAAAACG AGTAGCAAAG CTTGTACTAT CGACAAAACC AGAAAACCCG TCTGATTACA TCCTCAAATC CAACATCTAC TCAGCTTCCG GACTCTGGCA TCGCTCTGAA ATGATAAGAG AGGAAATGCG GGAAAGAGGT TACCGGAAAC ATCCTTCTAA AAGCTGGATA ATCCATGAGA ACAAAGTACA TTCCTTTCAC GCACGTGACA CATCCCACCC GCAAGAGAAA GACATATACA GCGGATTGGA GATACTGATA ATGGAATGTC TGAAAGCTGG ATACGAGCCA AACACAGAGT TTGTTCTTCA GGAGGTTGAT GAGTTTATGA AGAAGAGTTT CTTGTTTCAC CACAGCGCGA AACTCGCAGT GACTTATGGC ATTCTCACAA GCAATACTCG GGGAAAGCCG GTTCGGGTTG TGAAGAACGT GATGCTCTGT GGTGATTGTC ATGAGTTTTT CAAGTATGTT TCAGTTGTGG TAAAGAGAGA GATAGTTTTG AGAGATTCGT CAGGGTTTCA TCATTTTGTA AATGGCAAGT GTTCTTGTAG AGATCTCTGG TGAATCAACC AAGACCTTAG TTTTTGTAAT GTTTAATTTA TATAATCATA AGTTGTTAAT ACGAGAGTTT TGGGAGCTCT GCTCGATAGC TACAGAGTCC ATTCAAAGTT TC |
| Length | 2802 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 1149436.. 1152243 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G03800.1 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| TAIR curator summary | Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality. |
| Alias | [EMB166][EMB175][EMB1899][EMBRYO DEFECTIVE 166][EMBRYO DEFECTIVE 175][embryo defective 1899] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 8.12404 |
Ahg324042 | |
| 35.3836 |
Ahg899602 | |
| 48.1041 |
Ahg353746 | Initiation factor eIF-4 gamma, MA3 |
| 50.7937 |
Ahg903252 | FtsH extracellular protease family |
| 54.3507 |
Ahg922127 | pentatricopeptide (PPR) repeat-containing protein |
| 54.7723 |
Ahg471101 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| 62.7296 |
Ahg336171 | toprim domain-containing protein |
| 65.4064 |
Ahg944247 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein |
| 66.1513 |
Ahg485806 | fructokinase-like 1 |
| 68.7023 |
Ahg938054 | Mitochondrial substrate carrier family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|