Detail



ID : Ahg488801

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|488801|fgenesh2_kg.6__1935__AT5G23420.1
Sequence
AGAAATGGCT GGACCATCGA CGACTTCAAA CGCACCAAAG CAGAGGAAGA GAGTCGAAGC AGAAACTAGC AGCAACAATA CTTCTACTAC CTTACGTCGC GCTAAAGATG GAAGCGCTTT CGCTCTCTGT GAAGGATGTA ACAAGAGTGT AGCTGTAGCG CTTATAAGCA TGCACAATTG CAGTCTCGAT GCTAAGATCA GAGCTCAAGT TGTGGAGACA CAAGCAGAGG CTAAGAAGAA ACCTGCAGAG AAGAAGAAGG CAACAGCTGA TGGACCTAAG CCAAAGAGAC TTAAGAAAAC CAATGATGAG AAAAAGAGCT CTTCTACTTC AAACAAGCCT AAACGACCAC TTACTGCTTT CTTTATCTTC ATGAATGATT TCCGTAAAAC TTTTAAAACA GAGCATAATG GTTCATTTGC TAAGGATGCT GCAAAGATCG GTGGTGAAAA GTGGAAGTCT TTGACTGAGG ATGAGAAGAA AGTTTACCTA GATAAAGCTG CTGAACTAAA GGCAGAATAT AACAAGAGAA GCAATCTGAT GATGTTGATG ATGCTGGAGG AGAAAGAAGC TGATGATGCT GATGAAGCTG AGGAGAAAGA AGTTGAGAAA ACAGATGATG ACAGCAAAGA AGCTGAAGGT AAAGAAGAGG AGGAAGAAGA GATTTTGGAT GACTACTAGA AATGGATTTA TCTCTAATCG TTGTGATGCA TTGTAAATGA AGCCTTT 
Length727
Protein Sequence
Protein Residue
Map Locationscaffold_6: 7708791.. 7709551
Download Sequence
A.thaliana
AGI-codeAT5G23420.1
Descriptionhigh-mobility group box 6
TAIR curator summaryEncodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Alias[HMGB6][high-mobility group box 6]
Gene coexpression
MR
MR Locus Description
18.3303 Ahg490065 origin of replication complex 1B
18.7617 Ahg918959 WEE1 kinase homolog
20 Ahg496418 structural maintenance of chromosomes 2
21.8861 Ahg470351 targeting protein for XKLP2
31.749 Ahg476404 IQ-domain 8
38.0657 Ahg332577 DEK domain-containing chromatin associated protein
47.592 Ahg355445
47.6865 Ahg481044 ribonucleotide reductase 1
50.1996 Ahg491941
52.0769 Ahg470918 syntaxin of plants 111
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression