| Annotation |
|---|
| Description | jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1 |
| Sequence |
GAATCTAAAA CCACTCAGCT CTCCGCACCA TGTGAAAGGT TGGTGTAGTG GCAAGAACTC TTTCGAATCT GAACGCCTTA GCTCAGAGAT ACGAGCATTT TTTACCTAAT CCCCACAATT CCAGGAACCC AGAAATGATG GTTTTCGAAA GGCTCTAGCT TTCTCAAATC GAGATTTTGC TGAGGAGCTC ATTGAAAGAA TGCAAAATAG ACCATCTTTC TCTTGTCCTT TGTCTTTCAG ATCGTTTCTC TTTCAACGTG ATATTAGAAG ACAATACTAG ATACAGTGAG GTCCTTTGTA TTATCGGACC TTGAGTTGTC TTGTTTAAGT GGGATAACCT TTTAGTGAAC TTTTTTTTGT CTCGTGAGTT TTCTTTTTCG GGCTTGATGG GTAAAGAGAA TCAGTTGGAG ACAACAAATT GTGGAGTCAA TGATCACGAT TGTCCACCCG TCAAGAACGA AGAACTAGCA GCTGAGGCGC GTTATAGTAC AGACAGTGAC TCGGGTTTAC CAACCTGTCG TGTATGCCAT TCTGCAGAAT CTGACAGACG AGGAGATACT GCCTTGGGGT TTTTGGGGAT TACTCCTCCG GTTCCAGAAG CTCGTAAAAG CAATACAGAC GAAAACGCTG ATGATGTCAG CAAAGCTACA GAGTCTGAGC TGAAGAATTC TGTCGTCAAA AGCAATGGAA GGGAATCTGG CTTCATCGAA ATGACAAGTC CTGATGCGGA AGTTTTCATT TGCACAAATG ATATAGAAAT GGGAATCCAG CTGCATCAGG ATGCATTGCT TGAGCTTGGA TGTTCTTGCA AAAACGAGCT TGCTTTGGTA CACTACGCTT GCGCACTCAA GTGGTTTCTC AACCATGGAT CCACCGTGTG TGAAATCTGT GGACATCCTG CAGAAAATAT AAAGACTGCT GATTTCAACA AAGTGCTCAT TGCCTTGAGA GATTACACAG CACTAAGAGA AAGAACCGCT GATGGAGGAG ATCCAATCCC TGTATTAGCG GTGAGTGCAG ATTCAACCAT AGATTCAGAT GAAGTTGCTG CCATTCGAAG GCAACGACTT AGTGAGATAT CGTCATGGTT TGGTCCCCAT TCCCTGAACA ACAACAACAA TAGTTCTGTT GCGGCTTCTC AGGCTATCCC TGACCAACCT TTAGGAGTTG TGAACTTTGA CATCTTACCT ATGGAAAGCC GTGCAACTAA ATGGGCTGTG GAAGGTACTG GGATTCTACT TGCTACCGGT TTACTCACTG TTACTTTGGT CTGGCTCATT GCCCCTCGTG TTGGAAAGAA AACTGCTAGG AGCGGACTTC ACATCCTTCT TGGTGGTCTC TGTGCTTTAA CAATAGTCAT CTTCTTCAGA TTTGTTGTGC TCACTAGAAT CAGGTATGGT CCTGCACGCT ACTGGGCAAT CTTATTCATC TTCTGGTTTC TTGTGTTTGG TATTTGGGCT TCTCGTTCTA ATGCTTCTCA CAATAACCCT TGAATTCACC ATCTCTCTCT ATCTATCTGA GTCTGTATTC TTCTCATGGA GAAAAATGTA CATTGCTTCA TTAAAGAAAA ATAAGCTCAT GCTTCATTGA ATATATATAT GATTCATAAT GGTTGGTC |
| Length | 1618 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 19869962.. 19872672 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G63780.1 |
| Description | RING/FYVE/PHD zinc finger superfamily protein |
| TAIR curator summary | Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage. |
| Alias | [SHA1][shoot apical meristem arrest 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.55744 |
Ahg491344 | ABC transporter family protein |
| 9.21954 |
Ahg320599 | serine carboxypeptidase-like 51 |
| 11.8322 |
Ahg329483 | Pentatricopeptide repeat (PPR) superfamily protein |
| 17.1464 |
Ahg929397 | post-illumination chlorophyll fluorescence increase |
| 18.8944 |
Ahg929441 | NDH-dependent cyclic electron flow 1 |
| 20.0499 |
Ahg474355 | |
| 21.6333 |
Ahg482508 | catalytics;hydrolases |
| 26.3249 |
Ahg323421 | Phox (PX) domain-containing protein |
| 26.4575 |
Ahg487804 | Plastid-lipid associated protein PAP / fibrillin family protein |
| 26.4575 |
Ahg484952 | homolog of Medicago truncatula MTN3 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|