Detail



ID : Ahg887874

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|887874|Al_scaffold_0048_7
Sequence
ATGGCGCAAC AAGGGCAGGG AAGCATGGAC CCTGCCGTTC TCGATGATAT CATTCGTCGT TTGTTGGATT ACAGAAACCC TAAGCCTGGT ACGAAGCAGG TTATGCTCAC CGAGTCTGAG ATCCGACAGC TTTGCATCGT CTCTAGAGAG ATTTTCCTTC AACAGCCTAA CCTCCTTGAG CTCGAAGCTC CTATCAAGAT CTGCGGGGTA AATTTCGGAT TTCTGATTTA TGGGTTGTTT TCGTTTTTGG GATCTGAGGT CTTTTACTAT TTGTCTTCTG CTTGCTACAA AATCAAATAC CCCGAGAACT TTTTTCTTCT TAGAGGAAAC CACGAATGTG CTTCTATTAA CAGAATCTAT GGATTCTATG ATGAATGTAA ACGTCGATTC AGTGTGAGAC TCTGGAAAGT GTTTACAGAT TCTTTTAACT GTCTCCCCGT CGCTGCTGTT ATAGATGATA AGATATTATG TATGCACGGT GGGCTTTCTC CCGATTTGAC CAATGTGGAA GAGATTAAGA ACATTAAGCG ACCTACCGAT GTTCCAGACT CTGGTTTGCT CTGTGATCTG CTTTGGTCTG ATCCAAGCAA AGATGTCAAA GGTTGGGGGA TGAATGATCG TGGAGTCTCT TACACGTTTG GGCCTGACAA AGTCGCCGAA TTTCTAATAA AGAATGATAT GGACCTCATC TGCCGTGCCC ACCAGGTTGT AGAGGATGGG TATGAGTTTT TCGCCGATAG ACAGCTTGTT ACGATATTTT CTGCTCCCAA CTACTGCGGT GAATTTGACA ATGCTGGTGC TATGATGAGT GTTGATGAAA GTTTAATGTG CTCTTTCCAA ATTCTTAAGC CTGCTGATCG AAGGCCCCGG TTCTTATGA 
Length879
Protein Sequence
Protein Residue
Map Locationscaffold_48: 51060.. 52846
Download Sequence
A.thaliana
AGI-codeAT5G59160.1
Descriptiontype one serine/threonine protein phosphatase 2
TAIR curator summaryEncodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.
Alias[PPO][TOPP2][PROTOPORPHYRINOGEN OXIDASE][type one serine/threonine protein phosphatase 2]
Gene coexpression
MR
MR Locus Description
37.7492 Ahg931990 rRNA
37.7889 Ahg952676 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein
39.7995 Ahg346340 Leucine-rich repeat protein kinase family protein
53.1413 Ahg920808 Protein of unknown function (DUF962)
61.7495 Ahg925560 RNA polymerase subunit alpha
80.2621 Ahg952614 transposable element gene
87.8749 Ahg915338
90.4876 Ahg911969
92.2876 Ahg947484
92.6769 Ahg932011
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression