Detail


ID : Ahg904586

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|904586|Al_scaffold_0003_1714
Sequence
ATGGCGCTCG TGAAATCGGA AACGCAGGCG CTAGAAAACC ACCAGCATTC TTCAATGTTC GCTTCGCTTT ACGTCGGTGA TCTTAGTCCA GACGTGACGG AGCAAGATCT CATCCACAGA TTCTCCTTGA CTGTTCCGGT ACTCTCCGTT CATCTTTGCC GTAACTCTGT CACCGGAAAA TCCTTGTGTT ACGCTTACAT CAACTTTGAT TCACCTTTCA GCGCATCGAA TGCGATGGCT CGCTTAAACC ACACTGATTT GAAGGGAAAG GCTATGCGAA TAATGTGGTC TCAGAGGGAT CTTTCGTACC GTCGTCGTAC TGGGTTTGGA AATCTATACG TCAAGAATCT AGACATCTCG ATTACTAGCA GTGGCTTAGA GCGAATGTTT AACCCCTTTG GTGTCATACT TTCTTGCAAA GTCGTTGAAG AGAATGGACA AAGCAAAGGT TTTGGCTTTG TTCAGTTTGA GACAGAGCAA TCTGCTGTAA CTGCTCGCTC TGCTCTTCAT GGCTCTATGG TTGATGGCAA GAAACTGTTT GTAGCCAAGT TTATCAACAA GAATGAAAGA GTTGCTATGG CAGGGAATAA AGGATTCACA AACGTTTATG TGAAGAATCT TATCGAAAAT ATTACTGAGG ACATTCTACA TAGACTGTTT TCTCAGTATG GAACAGTCTC TAGTGTTGTG GTTATGAGGG ATGGAATGGG AAGATCTAGA GGTTTCGGAT TTGTCAACTT CTGCCATCCA GAAAATGCTA AGAAGGCTGT GGACTCTCTC CATGGACGAC AAGTTGGGTC GAAGACTTTG TTTGTTGGAA AAGCACTCAA GAGAGATGAA AGGAGGGAGA TGCTGAAACA TAAATACAGG GACAACTTTA TTGCCAAGTC TAACATGAGG TGGTCCAATC TGTACGTGAA GAACCTGAGT GAATCAATGA ATGATACAAC ACTGCGAGAA ATATTTGGAA GGTACGGGCA AATAGTCTCA GCTAAGGTGA TGCGTCATGA GAATGGCAGA AGTAAAGGAT TCGGCTTTGT GTGCTTCTCT AACCGTGAAG AGTCCAAACA GGCTAAAAGA TATCTCAATG GGTTTTCAGT TGATGGTAAG TTATTAGTTG TTCGAGTTGC CGAGCGCAAA GAGGATCGAC TCAAGAGGTT GCAGCAATAT TTTCATGCAC AACCACGCCA TTACACGCAA GCTCCTCTTG TCCCTTCACC TGCTCAACCA GTCCTCTCAT ATGTGCCTAG CTCATATGGT TACTTGCAGC CATTCCATGT CGGGGCATCT TATTACTATA TGGGCACTCA GTTACCACAA ATGTCTGGCC ACCAAAACAT CACCAACGAT GTTCCAGCTG GGAAAGGTCC TCTCAAGGAG AAAAGATCAT TGCACCTGGT CTACAAACAC CCGGCTTATC CCGTTGCCAA GAGTGAAGCT AAACAAAAGC TGGTCTTTAA GGGTGAGGGT AACCGAACTT TAGAGGCTGC AACATGCTCA AAAGCAACAA CATCTGATGA GGTCCTTAAT GAAGAAGCAA GCTCAACTTT GATAGCGATG TTGTCGTTGT CACCAAAAGA TAAGGCAGAG AAATCAGGAA AACAAATTGC AATGATTGAA GCTGCTTAG
Length1629
Protein Sequence
Protein Residue
Map Locationscaffold_3: 6530112.. 6532450
Download Sequence
A.thaliana
AGI-codeAT3G16380.1
Descriptionpoly(A) binding protein 6
TAIR curator summarypolyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.
Alias[PAB6][poly(A) binding protein 6]
Gene coexpression
MR
MR Locus Description
6.16441 Ahg929374 poly(A) binding protein 6
38.9743 Ahg916047
44.9667 Ahg914583 Ubiquitin-like superfamily protein
52 Ahg930374
67.1937 Ahg890457 F-box family protein with a domain of unknown function (DUF295)
69.0217 Ahg890803 Protein of Unknown Function (DUF239)
69.4262 Ahg938130
82.3408 Ahg911021 Glucose-methanol-choline (GMC) oxidoreductase family protein
94.2974 Ahg945937
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression