Detail


ID : Ahg907865

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|907865|Al_scaffold_0002_946
Sequence
ATGGGTTTGC CTTGGTATCG TGTTCATACT GTTGTATTGA ATGATCCCGG TCGTTTACTT TCTGTTCATA TAATGCATAC TGCTCTGGTT GCTGGTTGGG CTGGTTCGAT GGCTCTATAT GAATTAGCAG TTTTTGATCC CTCCGACCCC GTTCTTGATC CAATGTGGAG ACAAGGTATG TTCGTTATAC CTTTCATGAC TCGTTTAGGA ATAACCAATT CGTGGGGCGG TTGGAATATT ACAGGAGGGA CTATAACGAA TCCGGGTCTT TGGAGTTACG AAGGGGTAGC CGGAGCACAT ATCGTGTTTT CTGGTTTGTG CTTCTTGGCA GCTATTTGGC ATTGGGTATA TTGGGATCTA GAAATTTTTT GTGATGAACG TACAGGAAAA CCTTCTTTGG ATTTGCCCAA GATTTTTGGA ATTCATTTAT TTCTTTCAGG AGTGGCTTGC TTCGGTTTTG GCGCATTTCA TGTAACAGGA TTATATGGTC CTGGAATATG GGTATCCGAC CCTTATGGAC TAACCGGAAA GGTCCAACCC GTAAACCCGG CGTGGGGCGT GGAGGGTTTT GACCCTTTTG TTCCGGGAGG AATAGCCTCT CATCATATTG CAGCAGGGAC GTTGGGTATA TTAGCGGGCC TATTCCATCT TAGTGTTCGT CCGCCTCAAC GTCTATACAA AGGATTACGT ATGGGCAATA TTGAAACCGT TCTTTCCAGT AGTATTGCTG CTGTCTTTTT TGCAGCTTTT GTTGTTGCTG GAACTATGTG GTATGGTTCT GCAACTACTC CTATCGAATT ATTTGGTCCT ACTCGTTATC AATGGGATCA GGGATACTTT CAACAAGAAA TATATCGAAG AGTTAGTGCT GGACTGGCTG AAAATCAAAG TTTATCAGAA GCTTGGGCTA AAATTCCTGA AAAATTAGCT TTTTATGATT ATATTGGTAA TAATCCAGCA AAAGGGGGGT TATTCCGAGC AGGTTCAATG GACAATGGGG ATGGAATAGC TGTTGGATGG TTGGGCCACC CCGTCTTTAG GAATAAAGAA GGGCGTGAAC TTTTTGTACG CCGTATGCCT ACTTTTTTTG AAACTTTTCC GGTTGTTTTG GTAGACGGAG ACGGAATTGT TAGAGCCGAC GTCCCGTTTA GAAGGGCAGA ATCAAAATAT AGTGTCGAAC AAGTAGGTGT AACTGTTGAG TTTTATGGTG GTGAACTCAA TGGAGTGAGT TATAGTGATC CCGCAACTGT GAAAAAATAT GCTAGACGGG CTCAATTGGG TGAGATTTTT GAATTAGATC GTGCGACTTT GAAATCCGAT GGTGTTTTTC GTAGCAGCCC AAGAGGTTGG TTTACGTTTG GACATGCTTC GTTTGCTCTA CTTTTCTTCT TTGGACACAT TTGGCATGGT GCTAGAACCC TCTTCAGAGA TGTTTTTGCT GGTATTGATC CAGATTTGGA TGCTCAAGTG GAATTTGGGG CATTCCAAAA ACTTGGAGAT CCAACTACAA AACGACAAGC AGTCTGA
Length1527
Protein Sequence
Protein Residue
Map Locationscaffold_2: 8187803.. 8189329
Download Sequence
A.thaliana
AGI-codeATCG00680.1
Descriptionphotosystem II reaction center protein B
TAIR curator summaryencodes for CP47, subunit of the photosystem II reaction center.
Alias[PSBB][photosystem II reaction center protein B]
Gene coexpression
MR
MR Locus Description
1 Ahg475560 photosynthetic electron transfer A
1.41421 Ahg925462 photosystem II reaction center protein J
2.64575 Ahg925461 photosystem II reaction center protein E
2.82843 Ahg475557 photosystem II reaction center protein H
2.82843 Ahg936827 Ycf1 protein
2.82843 Ahg475609 photosystem II reaction center protein H
3 Ahg475584 ATP synthase subunit alpha
3.31662 Ahg475597
4.24264 Ahg925574
4.24264 Ahg475583 ATPase, F0 complex, subunit B/B', bacterial/chloroplast
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression