Detail



ID : Ahg914231

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|914231|Al_scaffold_0001_4485
Sequence
GCCGTAAACC AATTAGTGAA TCATTTCAAA AGGAATTGGG ATGTTCCTAG CATAACGGAT GTCAGAGTAA AGCTTGAGAA TATAAAGCAA ATTCTTAAGT CTCATGTATT TTCTGATTTT TCCAGTCTAG CTACTGGGAA AGAGACAGAG GAAATGTCTT TACTAAAGAA GTTATCTGAT GCTTGCTTGG TTGTCGATGC GTTGGAGCCA TCTGTGAGGG AAGAGTTGGT AAACAACTTT TGCAGCACGG ATCTAAGCTC ATATGAACAA AAAATTATAG AAGCTGAATT GACAAATTTG GATGAAATAC AGCGGATATA CAATCAGATA CATTGTCATA TCCGAACAAA TCAAGAAATC TGGAAGATTT TTCCTGCTTT GTGGCATGTG CCTTATGGAC TGTGCATCAA GATCTGCAAG ATAACAAGGG GCCAAGTAGA ATCTATTCTG GTCAACATGA AAGGAAAGCC AGCTGCTGTA GCGAGATTGC TTCAGGAACT GGAAAGGACG CTAAAGTTTG AACTGGAACT TGAAATGAAA TTTGGTGGTG TTCCTACTAA GCATATTGGA GATGACATTG AGGAAACTGT TGACGGGGAA AGTTATAGTC GGAATGTATC CGAAATTCAC ATGAAGTTTG GTGCTAATCA CGACTTGGTG GAAACTTTTA ACTTCCGTGG AATTATCTCT TCTTGCTTCG AGCCTCATTT AACCAAATAT ATTGAGGAGG AACTAATGCA ATGCCTGGAA AGAGTTGTTC AGGAGGAAAC ATGGGATACT GATGAGGAAA ATCTAAATAA TATTTTATCT AGCAGTAGAG AGGTCTTTCA ACGAGTTCTA CAAGCCTATG CTACAAAGCT ATTTTTTAAG CTCTCCAAAG GAGGCACTCG TAAACAGATA GAGGTGCTGT GCACTGCTTT CTGTTTCCCA TATGTGCTTT TCGATGTTGT TAAGCTCTTT TTTAATACCC CTATGCAGGT CTCGGGGATA GATGAAAGGT TGATATGTTA CATAGTTAAT TCTGCTGAGT ATTGCCGCAA AACATCTGGT GATTTGGCAG AAGAAGTCTC GACAATTATT GACCCGCTTT ATGCAGACGG TGTAGACATG TCAGAGGTCC AGGATAAATT ATCGTGCGTC ATAACGAAGG CATTGATGAC ACTAGTCCGT GGACTGGAAA CTAAATTTGA CACAGAAATG CAAGAGATGG CATGTGTTTC ATGGGGCACA CTTGAGAGTG TTGGTGACCA TTCTCAGTAC GTAAATGGAA TATATACAAT CCTTAACAAC AGTTTTCCTG TCCTTGGGAA ACTTCTAGCA CCAGTCTACT TCCAATTCTT CCTGGAAAAG TTGGCATCAT CCCTTGGACT ACGGTTCTAT GCTAATATTT TCAGATGCAA GAAAATATCA GAAACTGGAG CTCAGCAGAT GTTGCTAGAT ACGCAAGCAA TGGAGATGAT TCTTTTAAAA GTTCCATCTC TTGACAGACA GACCGTAAGT GCTGCGAGCT ATTCGGAATT CGTGAAGCGT CAAATGAGCA GAGCTGAAGC AGTCCTAAAG GGTCTTACGA AAGCCAATCA GCAGAGAGTA CTTGATGATT TCAATAAGCA TGCCCCAAGA ATCACACAGC CTTCGGTTGC AGCAGAAATG CCACAACCGG TTCCAATCCC ACCTGCACCG CCATTGGAAA TCATAGCAAA AAGTGAGGAT GTTACAACTA GACTAGCAAC CGCTAGCTAT TAG 
Length1743
Protein Sequence
Protein Residue
Map Locationscaffold_1: 25633348.. 25637118
Download Sequence
A.thaliana
AGI-codeAT1G50500.2
DescriptionMembrane trafficking VPS53 family protein
TAIR curator summaryencodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.
Alias[ATVPS53][HIT1][VPS53][ARABIDOPSIS THALIANA VPS53 HOMOLOG][HEAT-INTOLERANT 1]
Gene coexpression
MR
MR Locus Description
2.44949 Ahg336232 F-box family protein
20.9762 Ahg933270
24.2899 Ahg348673 ADC synthase superfamily protein
32.9848 Ahg934282
40.8044 Ahg344438
41.833 Ahg922613
42.4264 Ahg914847 Glycoprotein membrane precursor GPI-anchored
49.4773 Ahg922318
49.96 Ahg936220
52.5357 Ahg943179
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression