| Annotation |
|---|
| Description | jgi|Araly1|915598|Al_scaffold_0008_349 |
| Sequence |
ATGGCGGCTT CCTCCACCTC CACAGTACCT CCGCAACACC AAGTCTTCAT CAATTTCCGG GGGAAGGATT TGCGCAATGG ATTCGTCAGC CATCTCGTTG AAGCGTTAAT TAGGAATAAG ATCAATGTAT TTATGGACAA ATTTGAAGAC AGAGGTAAAT CGTTAGAATC CCTTTTAACG CGGATAGAAG AGTCGAGAAT CGCTCTAGCT ATCTTCTCAG AGAACTATAC TGAATCAGAC TGGTGCGTGA AAGAGGCGGA TAAGATGAAC GATTGCATGA AGGAAGGTAC ACTGGTGGTG ATTCCCATCT TCTACAAGGT GAAACCATCT ACCGTAAGAG ATTTGGAAGG ACGTTTCGGT AATAAATTCT GGAGTCTTGT GAAGGGTGAT GAGAGGAAGA AGAAGTGGGA GGAAGTTTGG AAGTCGATTC CTAATCTATT CGGCATTACT GTGGACGAGA AAAGCGACGA GAACCGGACA GTTAATGAAA TTGTGGTGGC GGTTTCGAAT GTTCTATCCA AAATTCCTTG GGTGAGAAAC GAACGACGCC TAGAGGAATT GGAAGAGAAG CTGGATTTTG AAGACGATAG TCGAACTCGT ATCATTGGAG TTTTTGGGAT GCCTGGAATT GGTAAAACCA CACTCTTAAA AGAGCTCTTT AAGAAGTGGA AGCCTAAGTT CATTAGGCAT TCGTTAGTTG ATCAAATCCG TCGAAAGTCA GAAGACTCCA GTGTTTGTTT ACCCACAACT CTCTTAGGAG AGTTGCTGAC GTCGTTGGCA GATCCCCGGA TTGACAATGA TGAAGACCCA TACAACATGT ACAAGGATGA GCTGCTCAAA CGCAAAGTTC TTGTCATTCT TGACGATGTT AGTACAAGGG AACAAATAGA TGCTCTTCTC GGGAGACGTG ACTGGATTAA GAAAGGAAGC AAGATTGTCA TTGCAACAAG TGACATGTCA TTAACAAATG GCCTGGTTGA TGATACTTAC ATGGTCCAAA AATTGAACCA CAGAGACAGC TTACAAGTTT TTCACTATCA TGCTTCTGTT GATAAATCCA AGGATGATTT CATGAAGCTG TCGGAAGAGT TTGTACATTA CTCCAGAGGC CACTCACTAG CTCTCAAAGT ATTGGGTGGA GATCTTAAGA AGCAAAATAT AGATTATTGG AATGACAAAC TGAAGACACT CACACAAAGT CCCATCCCTC GACGCGTCTT CAAAGTAAGT TATGATGAAT TGAGTTCAGA GCAAAAAGAT GCATTTCTAG ACATAGCCTG CTTCAGATCG CATGATGTAG AATATATAGA AAGTCTATTG GCTTCATCTA CGGGAGCAGT AGAAGCCCTT TCCGATATGT GCCTGATTAA TACTTGTGAC GGTCGAGTGG AGATGCATGA TCTTCTGTAT ACTTTGTCAA GGGAACTTGA TCCTAAAGCA TCCACTCAAA TTGGTGGTAG CAAACAACGG AGGCTGTGGC TCCATCAAGA CATTATCAAG GAAGGCACAA TTAATGTTCT GAAGAATAAA CTGGTGAGAC CTAAGGATGT GAGAGGAATT TTCCTAGACT TGTCTGAAGT GGAAGGCGAA ATATGCTTAG ATTGCGACCA CTTCGAAGAT ATGTGTAATC TTCGGTACCT CAAGTTCTAC AATTCTCATT GTCCCCAGGA ATGTAAAACT ACCAATAAGA TAAACACCCC TGAAGGAGTT AAGTTACCAT TGAAAAAGGT TCGATGCCTC CACTGGCTAG AATTCCCGTT GGAAGAATTT CCAAACGATT TTGACCCGAT TAATCTCGTT GACCTTAAGC TGCCTCGCAG CAAGATTAAA CAACTCTGGG AGGGTGACAA GGATACACCA TTCTTAAAGT GGGTCGATCT CCAGCACTCA AGTAAGTTGT GCAGCTTGTC AGGGTTATTA AAGGCTGAAA AGCTTCAAAG ATTGAACCTT GAAGGTTGCA CAACACTGAA AACGTTGCCA CATGATATGC ACAAAATGAA AGTGCTTAGT TTCCTGAATC TGAAAGGGTG CACAAGTCTC GAATTTCTTC CAGAGATGAA TTTGGTTTCT CTGAAAACAC TTACTCTCAG CGGCTGCTCA AGTTTTAAAG ATTTTCCGTT GATTTCAGAT AATATAGAAA CACTATACTT AGATGGCACA GAAATAAGTC AGCTTCCTAC GAACATGGAG AAGCTCCAGA GCCTTGTGGT ATTGAATATG AAAGACTGCA AAATGCTGGA GGAAATCCCA GGTCGTGTTA ATGAGCTGAA AGCTCTTCAA GAACTGATAC TCTCTGATTG TTTCAACCTA AAGAATTTCC CTGAAATCAA CATGAGCTCT TTAAACATTT TACTTTTGGA TGGGACAGCC GTAGAAGTGA TGCCACAATT ACCCTCAGTG CAGTATTTGA GCTTAAGCAG AAATACGAAG ATCAGCTGCC TTCCTATTGG AATCAGTCAC CTTTCTCAAC TAAAATGGCT GAACCTGAAG TATTGTACGA AGCTTACATC TGTTCCAGAG TTTCCACCAA ATCTTCAGTG CTTAGATGCA CACGGCTGTA GTTTGCTGAA GACAGTTTCA AAGCCTTTGG CCCGTATCAT GCCAACCGAA CAGAATCATT CCACATTCAT TTTCACCAAC TGTCAGAACC TGGAACAAGC TGCAAAGGAG GAAATCACAT CGTATGCTCA AAGGAAATGC CAGCTGTTAT CATATGTTCG TAAACGCTAC AATGGGGGTC TTGTTTCAGA GTCTTTGTTC AGCACTTGCT TTCCTGGATG TGAAGTGCCT TCTTGGTTTT GTCATGAAAC AGTTGGATCT GAGTTAGAAG TAAAACTCCT CCCACATTGG CATGACAAGA AGCTTGCCGG GATTGCTCTA TGTGCTGTAG TCTCATGTCT TGACCGCCAA GATCAAATCA GTCGATTTTC AGTGACATGC ACCTTTAAGG TTGAAGACAA GTCTTGGATC CCATTTACTT TTCCAGTAGG AAGTTGGACC AGACATGAAG ACGGAAAAGT GACCAGACAT GAAGACGAAA AAGACAAGAT TGAGTCAGAC CATGTGTTTA TTGGTTACAC CAGTTACCCA CATACTATAA AGTGTCCTGA AGACGGTAAC TCGGATAAAT GCAATTCTAC CCAAGCCTCC CTTAATTTTA CTATCACAGG TGCGAATGAA AAGCTTAAGG TGTTGCAGTG TGGTTTCAGT CTGGTGTATG CAAGGGATAA GTACAAAAAC AGTTCTCATG AAGGAAAGTA CGATATGCCA GTTGAAAAGA ACTTTCAAGA AACTACAGAA GGGGTTTATG GAAGAGTAAA GAAAAAGAAA AAAACAAGAA GGGATAATGG ACGGCCAAAA AAGAAGCAAA GATCAGGAAG AGATGATAGG GCCTGTTCGG AACATTGTCA CTAG |
| Length | 3414 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 2110312.. 2114104 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G45250.1 |
| Description | Disease resistance protein (TIR-NBS-LRR class) family |
| TAIR curator summary | RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames. |
| Alias | [RPS4][RESISTANT TO P. SYRINGAE 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 34.8138 |
Ahg490202 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein |
| 36.0278 |
Ahg927049 | Auxin efflux carrier family protein |
| 38.8844 |
Ahg490264 | endoplasmic reticulum auxin binding protein 1 |
| 40.7922 |
Ahg481385 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein |
| 44.2267 |
Ahg473745 | |
| 50.3488 |
Ahg470074 | secretory 1A |
| 70.0999 |
Ahg914333 | Leucine-rich repeat protein kinase family protein |
| 72.7461 |
Ahg939482 | 2-oxoglutarate-dependent dioxygenase family protein |
| 80.5792 |
Ahg487844 | myo-inositol-1-phosphate synthase 3 |
| 83.857 |
Ahg928205 | germin-like protein 8 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|