Detail



ID : Ahg915619

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|915619|Al_scaffold_0008_370
Sequence
ATGGAAGCTC GCAAAATGGT CAAAATTATC AACTTCGATA GCTCAGAAGA GACACTACGG TGCTCCTTCG TCCCCCATCT ATCCGCAGCA TTTGGGCGTA AAGGCATCTC TGTTCTCACA GATAAACACG ATCAATCCTA CAAGTCCATT GCTTCTGTAT TGATTTTCTC TGAGAATTAC GTGTCCTCCA AGGAATCTTT GGATGAATTT ATAAAGTCTA TCCAACGGAG ACATGAGAAA GGCCATATCG TGACCGCTAT CTTTTATGGA GTCAGTAGAT CAAATGTGCA AGAACTGATG GGAAATTTCA GCAAGGCGTT CTTGGAGCAC CGCGATTCAG ATCAAGTAAA TCAATGGCGC AATGCTCTTG CGGAAATAAC AAGCTTACCT GGCTACGAAA CAAGCAATAA TCAAAGTGAC TACAAATCTG TGGAAAAGAT CGCGAGAGAT CTTTACGAGA AGCTCTTTCC GAATGAACGA ATTGGTATCT ACTCAAGGAT GCTGCCGGAT ATAGAAAACT TGATACAAAA GCAACAGTGG GGAGTCAGAA GCATAGGGAT TTGGGGTATG CCAGGCATAG GCAAGACTAA GCTTGCTAAA GCAGTCTTTG ACCAAATGTC TTGTGACTAC GAAGTTACTT GCTTCCTACA AAACTTTCAT GAAACCATTC ATAAGAAGGG ACTTAACGGT TTGCTGCAGG AACAATTCAA GAACTTTCCA AACCAAACAC TTCAGCAAAG AGTTCTTGTT GTTCTTGATG ATTTGAAAAA TCATCTAGAT GCAGAGTCTT TTCTCGGTGG GCTTTTCTTG TTTAGTCCCG GAAGCCTGAT CATCATAACC TCCAGCGATA AGCAAGTGCT TTCTCAGTGT GGAGTCAATC AAATTTACAA AGTCGAAGGA TTAAACAAGC ATGAGGCTCA GCAACTATTC TCCTCGTGTG CCTTTGGAAA AGATGCGAAG GAGAATAATC TTCCTACGGA GCTTTCTATG AAGGTGATTG AATACGCTAA TGGAAACCCT TTAGCTCTAC AATTATATGG CGAAAAGATG TCATCACAAG AGCAACCGAA CCAAAAGGAA ACTTTGTTCC TCAAGCTCAA GCAAGCTCCT CCACAACGGA TTGTGGAAGT AGTCAAGAGT AGCTACTTTC CACTTAGTGA CAACGAAAAG AACATACTTG TGTATATTGC TTTCTTTTTC ACAGGGGAAC ATGTTGACTA TGTGTCGACA CTACTACAAG ACCTTGGTTT CTTTCCAGAC ATTGGAATCA ACCGGCTTGT GGAGAACTCT CTGGTGACCA TTTCAGAAAA CAGATTGGAC ATGCATGGCC TGATACATGC AGTAGTTCGG GAAATCGGGA GTCTGGACCA AAATCAATGA 
Length1380
Protein Sequence
Protein Residue
Map Locationscaffold_8: 2254262.. 2255720
Download Sequence
A.thaliana
AGI-codeAT5G45260.1
DescriptionDisease resistance protein (TIR-NBS-LRR class)
TAIR curator summaryConfers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2.
Alias[ATWRKY52][RRS1][SLH1][ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52][RESISTANT TO RALSTONIA SOLANACEARUM 1][SENSITIVE TO LOW HUMIDITY 1]
Gene coexpression
MR
MR Locus Description
12.1244 Ahg915647
16.0624 Ahg923265
25.8263 Ahg911039
31.1127 Ahg906459
40.1497 Ahg911037
47.4974 Ahg916359
51.4781 Ahg487217 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
53.4416 Ahg938956 protein kinase family protein
53.9444 Ahg315393
63.561 Ahg922713 glutamine synthetase 1.3
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression