Detail



ID : Ahg917925

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|917925|Al_scaffold_0008_2676
Sequence
ATGGTGAATC CTAGTCCAGC AAGTTTTTGG ACGCAAGCCA ATGCGTTACT TAGGAAGAAC TTAACCTACC AGAGGAAACA CATATGGACA AATGTTCGGC TCATCCTGGT TCCACTCTTC CTCTGTTTAA TTCTGCTGGC GATTCAACAA GTGCTTGATG CCTTGATGAA GAGTGTCTCT GATATGTCTA ATTGTGGAGG CAACGTTACT TTGCCTGGTG GTATCTGTCC CATCCCAAAC CCTCCACCGT TGCCTCCGAT GTTGCAGATT CCACAACATG AACTCCGTTC CGTTAAGACC GATTTCTTTT CCTACAAAGA TCTCCCTGAC AAGTCATGCA GAGGAACAGG ATCTTGTCCT GTAACGATAC TTATCACTGG TGATAAACTG GCTCTTGGAA AAGCTTTATC CGCAAATATC TTCAGCACTT CTTTTGTGGT TAATTCCTCC GACCTCTTGC CTACTTTAGC CAATAACGTC TTGGGTTCAA CAGAAGCAGC GGGGGAAGAC AATTATGAAG ACCCGGGGAT TGCCTCAGAT CTCCCTATTT ACAGTATCCA ACCTTCTTGC AGTGCAAACT CTACATGGCC ACTCTCGCTC GGACAAATTC AGACAGCGGT GAAGTGTGTT CAAGGGTTGT GTCTCTGGAG AAATAACTCT GTAGAGGTCA ATGATGAGCT TTTCAAGGGT AGTTGGAGGG GAAACCCTGC GGGGATGACA AATGAGATCG TTGCAGCATA CGATCTCATG AGCACGGATA GGAAAAATTT CAATGTGACC ATATGGTATA ACTCAACCTA CAATGATGAG TTTTCAACTG GTCAGCCTTT AAAGCTGGTC CGAGTTCCCC GCTCTATCAA TCTGATATCA AATGCTTATC TTAAGTTTCT AAAAGGCCTT GGGACAAGGA TATTATTTGA GTTTCTCAAA GAAGTTCCTA AAAAAGAAAC GAAAATGAAT CAAGACATTG CGTCCTTGCT AGGCCCACTT TTCTTCACTT GGGTTGTTCT TCTTTTGTTC CCCGTGATCT TGACATCATT GGTGTATGAG AAGCAAGAAC GTCTAAGAAT TATAATGAAA ATGCACGGGC TAGGCGATGG TCCATATTGG ATGATTTCAT ATGCCTATTT TCTCACCATA TCTATGTTGT ATGTTATTTC TTTGGTGAGC TTCGGGTCTG CTATAGGACT CAAGTACTTC CGGCTCAATG ACTACAGCAT CCAGTTCGTT TTCTATTTTA TCTACTTAAA TCTACAAATC TCCCTCGCCT TTCTAGTCTC TTCGATATTC TCAAAGGTTA AGACTGTAAC AGTCGTTGCT TACATATTGG TGTACGGAAC TGGGCTCTTG GGTAGCTTTC TTTTCCAAAA AATGATTGAA AATCAGTCAT TCCCGGAAGA ATGGATTCTT GCCATGGAGT TGTATCCCGG CTTTTCTCTG TACCGCGGGT TGTATGAGTT CTCGCAATAT GCCTCCCGGG GAAACGGGAT GAAGTGGCAA GATCTCAGTG ATAGCGGAAT GGGTGAAGTT TTCTGTATCA TGTCAATAGA GTGGTTTCTT GCTCTCATTG TAGCCTACTA TATCGATCAG GTTTTCACAT CCGGAAAGCA TCCTTTCTTT TTCTTGGTGA ACCCTTTCAA GAAACCTTCT TCCCTACCAA GGAGGCCTAC TGTGCAAAGG GTGGATTCTA AAAAAGTCTC CATAGATATA GAAAAACTTG ATATCACTGA GGAGAGGGAA AAGGTTCAAA AATTGAGGAA TGAAGGTAGC ACAGGGCATG CGATCTTGTG TGACAACCTG AAAAAGGTTT ATCCAGGTAG AGATGGTAAC CCGCCAAAAA TGGCAGTACG AGGGTTGTAT CTCAGCGTTC CTTCAGGAGA ATGCTTCGGC ATGCTTGGAC CTAATGGTGC CGGCAAAACT TCCTTCATCA GTATGATGAC AGGGCTCCTC AAACCGTCAT CTGGAACAGC CTTGGTTCAG GGTTTGGACA TATGCAAGGA TATGAACAAA GTATACACAA GCATGGGCGT ATGCCCGCAG CATGACTTGC TTTGGGAGAC GCTAACAGGA AGGGAACATC TTCTCTTTTA CGGTCGACTT AAAAATATCA AGGGCTCTGA TCTAACACAA GCTGTTGTAG AATCTCTCAA AAGTGTCAGC CTATTCGATG GAGGAGTTGG CGACAAACCT GCTGGTAATT ACAGTGGAGG TATGAAAAGG AGGCTTAGCG TGGCCATATC GCTTATCGGG AACCCCAAGG TGGTTTATTT AGATGAGCCA AGCACAGGAC TTGATCCAGC CTCGAGGAAG AATTTATGGA ATGTGATCAA GCGTGCAAAA CAAAACACAG CAATAATTCT CACAACTCAC TCGATGGAAG AAGCCGAATT TCTATGCGAT AGATTGGGAA TTTTTGTAGA CGGAGGCTTG CAATGCATAG GAAACTCTAA GGAACTGAAG AGCAGATACG GTGGATCATA TGTCTTCACG ATGACAACAT CTTCAAATCA TGAGGAAGAG GTAGAGAGAT TGGTTGAATC TATCTCTCCC AACGCCAAGA AGATATATCA CCTTGCTGGT ACTCAGAAAT TCGAGCTCCC AAAGCAAGAG GTTCGGATTG CTGAGGTGTT TCGCGCTGTT GAAAAGGCCA AATCATCCTT CACAGTCTTT GCCTGGGGAC TCGCGGACAC AACTCTCGAA GATGTCTTCA TCAAAGTTGC TAGAACTGCT CAAGCCTTCA TTTCCTTGTC TTAA 
Length2754
Protein Sequence
Protein Residue
Map Locationscaffold_8: 18926474.. 18943931
Download Sequence
A.thaliana
AGI-codeAT5G61700.1
DescriptionABC2 homolog 16
TAIR curator summarymember of ATH subfamily
Alias[ABCA12][ATATH16][ATH16][ATP-binding cassette A12][ARABIDOPSIS THALIANA ABC2 HOMOLOG 16][ABC2 homolog 16]
Gene coexpression
MR
MR Locus Description
4.24264 Ahg475725 Subtilase family protein
9.05539 Ahg316947 Pectin lyase-like superfamily protein
9.38083 Ahg351609 Protein of Unknown Function (DUF239)
13.1909 Ahg492665 root hair specific 14
13.4164 Ahg930873 general control non-repressible 4
13.4907 Ahg951906 MATE efflux family protein
17.7764 Ahg481664 transposable element gene
18.4391 Ahg888244
19.0263 Ahg943087
20.9762 Ahg947946
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression