| Annotation |
|---|
| Description | jgi|Araly1|919570|scaffold_100851.1 |
| Sequence |
TAATCTATCA TCGCCGCAAA ATGAGCGGAG ACAATCGAAG ACGGGATCGA AAGGATACGC GGTGGTCGAA GAAGCCTAAG GTAGTGAACA CTGCGGAAGA TGAACTCGAA TCTAAACTCG GATATGGGCT TTTCTCTGAA GGTGAAACCC GACTTGGCTG GTTACTCACA TTCTCATCCT CATCTTGGGA AGATCGCGAT ACTGGGAAAG TCTATAGTTG TGTGGACCTT TACTTTGTTA CTCAGGACGG GTTTTCTTTC AAGACAAAGT ACAAGTTCCA CCCATACTTC TATGCAGCCA CGAAAGACAA AATGGAATTG GAAGTCGAAG CCTATTTGAG ACGCCGATAT GAAAGACAAG TCGCTGATAT TGAGATTGTT GAAAAAGAGG ATCTTGATCT TAAAAATCAT CTATCCGGCC TGCAAAAGAA ATACCTAAAA ATATCATTTG ATACTGTGCA ACAATTGATG GAAGTCAAGA GGGATCTGCT GCATATCGTT GAACGAAACC AGGCAAAATT TGATGCACTT GAAGCATACG AATCCATATT GGCTGGAAAA CGAGAACAAC GTCCTCAAGA TTGCTTAGAC TCTATCGTGG ACCTCCGCGA GTACGATGTT CCTTATCATG TTCGATTTGC AATTGATAAT GATGTGCGGA GTGGGCAATG GTACAATGTC AGCATTTCCA GCACCGATGT CATACTGGAG AAGAGGACAG ATCTTCTTCA ACGCGCAGAA GTCCGTGTTT GTGCCTTCGA TATAGAGACA ACAAAGCTTC CGTTAAAGTT TCCGGATGCT GAATATGATC AAATTATGAT GATATCCTAC ATGGTCGATG GGCAAGGTTT TCTAATTATT AACAGAGAGG TAACTGCTTG TGTTGGCGAA GATGTAGAAG ATCTGGAATA TACACCCAAA CCAGAATTTG AAGGGTATTT CAAAGTTACT AATGTTAAAA ATGAGGTTGA ACTCCTCCAA AGATGGTTTT ACCATATGCA AGAGTTGAAA CCCGGTATTT ATGTTACATA CAATGGTGAC TTTTTTGACT GGCCATTTAT AGAACGGAGA GCATCTCATC ATGGGATAAA AATGAATGAG GAATTGGGAT TCCGGTGTGA TCATAATCAA GGTGAATGTC GAGCTAAATT CGTTTGTCAT TTGGATTGTT TTGCTTGGGT TAAACGTGAT AGCTATCTTC CTCAGGGAAG CCATGGTCTG AAGGCTGTAA CAAAGGCAAA ACTGGGTTAT GATCCACTGG AAGTGAACCC AGAGGATATG GTTCGGTTTG CGATGGAAAA GCCACAGACA ATGGCCTCCT ACTCTGTCTC TGATGCTGTT GCAACTTACT ACCTATACAT GACATATGTC AATCCGTTCA TTTTTTCTCT CGCAACTATC ATCCCAATGG TCCCTGATGA GGTTTTACGC AAAGGGAGTG GCACCCTTTG TGAAATGCTT CTGATGGTTC AGGTATCAAC CTATCTACCA CAAGCACAGG CTTACAAGGT AAATGTTGTA TGTCCCAACA AAAATCAAGC TGACCCTGAG AAATTCTACC AAAATCAACT TCTTGAAAGT GAGACATATA TTGGTGGGCA TGTAGAGTGC CTTGAAAGTG GTCAACTGAT TGATAACCTT GGTCGGGATC TGGAATATGC TATCACTGTA GAAGGGAAAA TGAGAATGGA TTCAATTTCC AATTATGATG AAGTGAAGGA CGAAATCAAG GAGAAGCTCG AGAAACTACG AGATGACCCT ATACGTGAAG AGGGGCCTCT TATTTATCAC CTTGATGTCG CAGCGATGTA TCCAAATATC ATTTTAACAA ACAGGCTCCA GGTACATCTA ATCTCTCCAC CATCAATAGT TACGGATGAG GTTTGCACAG CATGTGATTT CAACCTCCCC GGAAAGACCT GTCTTAGAAA ACTTGAATGG GTTTGGCGTG GGGTGACATT CATGGGAAAG AAAAGTGATT ATTACCATTT GAAGAAGCAG ATTGAGTCTG AATTTGTTGA TGCTGGTGCA AATATACAGT CTTCAAAATC ATTCCTTGAT CTGCCAAAGG TGGATCAACA ATCTAAGCTA AAAGAAAGAC TAAAAAAATA TTGTCAAAAG GCTTATAAAC GAGTACTTGA CAAGCCAATT ACTGAAGTTC GTGAGGCTGG GATATGCATG AGAGAAAACC CGTTCTATGT GGACACTGTT CGGAGCTTTC GAGATAGGAG GTATGAATAC AAAACACTTA ACAAGGTCTG GAAGGGAAAA TTGTCAGAGG CCAAGGCAAG TGGTAATTCA ATCAAGATCC AGGAAGCACA GGACATGGTA GTGGTTTACG ATTCCTTGCA GCTAGCTCAT AAGTGTATTC TTAATTCCTT CTATGGATAT GTCATGCGAA AGGGTGCAAG ATGGTATTCC ATGGAAATGG CTGGTGTAGT TACCTATACT GGAGCCAAAA TCATACAGAA TGCCCGTTTG CTTATTGAGC GAATTGGGAA ACCACTTGAG TTGGATACAG ATGGTATATG GTGTTGTCTC CCTGGATCTT TTCCTGAGAA CTTTACTTTT AAAACAATAG ACATGAAGAA ACTCACGATC TCGTATCCTT GTGTTATGCT TAATGTTGAT GTGGCAAAAA ATAATACAAA TGATCAATAT CAGACTCTTG TAGATCCTGT ACGCAAGACT TATGAATCAC ATAGTGAATG CTCAATTGAA TTTGAAGTAG ATGGACCGTA CAAGGCAATG ATTATTCCTG CATCGAAAGA AGAAGGAATC TTAATTAAGA AGCGCTATGC TGTTTTTAAT CATGATGGAA CCTTAGCAGA ACTCAAGGGG TTTGAGATCA AGCGTAGAGG GGAGTTGAAA CTCATTAAAG TTTTCCAGGC CGAGCTTTTT GACAAATTTC TCCATGGATC AACCCTTGAA GAGTGCTATT CTGCTGTTGC AGAGGTTGCT GATCGATGGC TTGACCTACT CGATGTATGC GAAATAGCTC TCATTTTTCT CATAGGTTTC CTTTCACATT TTCTCCAGAA TCAAGGAAAA GATATTGCCG ATAGTGAACT GCTAGATTAT ATATCAGAAT CAAGCACAAT GAGCAAATCG TTAGCAGATT ATGGTGAGCA AAAGTCATGT GCAGTGACCA CAGCAAAACG CCTGGCTGAA TTTCTTGGTG TTACAATGGT CAAAGATAAA GGACTGCGTT GCCAGTACAT TGTTGCTTGT GAACCAAAGG GTACACCTGT AAGTGAACGT GCTGTTCCTG TTGCCATATT TACAACGAAT CCAGAAGTTA TGAAGTTTCA TCTTCGAAAA TGGTGCAAGA CATCATCAGA TGTCGGAATT CGTCTAATTA TTGACTGGTC GTATTACAAG CAGCGCCTTA GTTCAGCTAT CCAAAAAGTT ATTACCATTC CTGCTGCAAT GCAGAAGGTG GCAAATCCCG TGTCTAGGGT GCTTCATCCT GACTGGCTCC ATAAAAAGGT TCGTGAGAAA GACGACAAAT TTCGCCAGAG AAAACTAGTT GATATGTTCA GCTCAGCAAA TAAAGATGGT GTGTTGGAAA CAGATCATCC GGTGACTAAA GATAATGTGG AAGATATTGA GGATTTTTGC AAAGAAAACA AGCCTTCCGT GAAAGGGCCA AAACCAATTG CGCGATCTTA TGAAGTCAAG AAAAAACAGT CTGAACGTGA GCAGCAAGAG AGCTGGGATC CAGAGTTCCA TGATATCTCA TTTCAGAACA TTGACAAGAG CGTAAACTAC CAAGGATGGC TTGAACTGAA AAAGAGAAAA TGGAAAGTAA CTCTAGAAAA GAAGAAAAGA CGAAGGTTGG GTGATCTAAG ATCTCCAAAC CAGATTGATG CTCACGAGAT AAATCAAAAA GTTGGTCAGG GAAGAGGTGG TGTGGGTTCA TACTTTAGGA GGCCTGAAGA AGCTTTGACT AGTTCACATT GGCAGGTGTG CACAATAATA CAGCTGGTTC CAAGTCCACA GAGCGGACAA TTTTTTGCTT GGGTGGTTGT GGAAGGGTTG ATGCTTAAGA TCCCATTGAC GATCTCAAGG GTGTTTTACA TTAATTCCAA AGTTCCTATA GCTGAATATT TCCAAGGAAA GTGTGTCAAC AAGATTCTTC CCCATGGAAG GCCTTGTTAT ACTTTGACTG AGGTCAAGAT TCAAGAAGAT AAATTTAAAA AGGAAAGTAA AAAGCGTGCA GCTCTTCTTG CAGACCCCAG AGTTGAGGGC ATATATGAAA CTAAGGTGCC TCTGGAGTTT AGTGCTATAT GTCAGATTGG ATGTGTATGC AAAGTTGATA ACAAAGCCAA GCACCGTAAC ACCCAAAATG GATGGGAAGT TGGTGAACTT CACATGAAAA CTACTACTGA GTGTCATTAC TTGGAGCGTT CAATTCCACT TCTTTTCTTG TATAACAGTA CCTCAACAGG GCGTGCTATA TATGTTTTAT TTTGTCATGC ATCGAAGCTT ATGTCTGCCG TGGTAGTTGA TCCTTTTAAC AGCAATGAAT TATTACCATC TGCCCTAGAG AGACAGTTAA GAGATAGTTG CCAAGAATTG TCACTTGAGT CTTGGGATGG TATCCGTTTC CAGGTGCGCT ATGTTGACCA TCCCGAAGCT GCCAAGAAGA TTATACAAAT AGCAATAAGT GAATACAGAG AGGAAAATTG TGGACCAACT GTTGCTGTCA TCGAATGCCC TGTCTTTAAC TCCATGAAGG AAGGTATCAA GGCCCTGGAT GATTTCCCAT GTGTGAGGAT TCCTTTCAAC GGCGATGATA ACAGTTATCA GCCTGTCTCC TGGCAACGTC CAGCAGCAAA AATAGCAATG TTCCGTTGTG CTGCAGCATT TCAGTGGTTG GATCGGAGGA TTGCCCACTC AAGATACGCC CATGTGCCTC TGGGGAATTT TGGACTTGAT TGGCTAACAT TCACAATAGA TATCTTCCTA TCCAGGGCAC TCCGTGACCA GCAACAGGTC CTCTGGGTGT CAGATAATGG TGTTCCAGAC CTTGGAGGTA TAAACAACGA AGAGGCATTC TTTGCTGATG AGGTGCAACA GACAAGTTTA GTATTCCCTG GAGCGTATAG AAAAGTGTCT GTGGAGTTAA AGATCCATAA CTTGGCTGTT AATGCCCTTC TGAAAAGCAA CCTGGTGAAT GAAATGGAAA GAGGCGGTTT TTTGGGATTT GAACAGGATG TGAATCCTAG AGGAATTAAT TCAAACGATA ACACCAGTTT TGATGAGACC ACTGGATGTG CTCAAGCATT TCGTGTCCTG AAACAGTTGA TTCATAGTTG CTTGACTGAT GTGCGTAAAT CTGAAAATAT ATATGCTGAT TCCATTTTGC AACGTTTGTC TTGGTGGCTC TGCAGCCCTT CCTCGAAGCT CCATGATCCA GCTCTTCATC TCATGCTTCA CAAGGTCATG CAAAAAGTGT TTGCACTGCT ATTGACTGAT TTGCGGAGAT TAGGTGCTAT AATAATATAT GCAGACTTCT CAAAGGTCAT TATCGACACA GTGAAATTTG ATCTATCTGC AGCTAAGGCT TATTGTGAAA GCTTGCTATC AACGGTGGGG AATAGGTTGG TTTCTTCCTT GCTCGATATA TATGTCTATG ACTCTAAGTC TCTAATGGAC TGCACTCATT TTCCTGCCAT GATTTTTGTG CTTTTTTTTT ATAACTACGC TGGTATCCGA GCTACCGATG ATGAAATTTC ACTTGACGAA GTGACTATTG AACCAAAGTG GAACACAACC CTCACTCAAA CCAATGTTAG TGAAAACAAA AAACATGTGG CAACACATGG ACCATTTTTC TTGGACACTG ACGCATCTCA TCTATCTTGG CAGAGGGATT TCATTATAAT CGTTGCCAAG TTTATATTTG ACCCCTGGAA ATTTGCAATA GAGAAAAAAA AGGGCAGTTC AGAGAGTTTA GAGGCACAGA TGGTAGAATA TCTAAGAGAA CAGATTGGAT CAACCTTCAT AAATATGCTT GTTAAAAAGG TTGATGATAT CATGTCACAC ATGAAGGAGA TAAACGTTTC AGATGCATCT CGAGTTTCTG GTCAAGCTCC CAAAGGAGAT TACACGTTGG AATTTATACA GGTTATCTCT GCTGTTCTGG CTCTTGACCA AAACGTCCTG CAAGATGTTC TGTTAGAAAA CCTCTTTGTA ACTGGTTTTA TTCACAAATC CAACCTCATC TCGGGAAATC TGGTTCTTGA AACTATGTTT ACCAATAGAG TAATGAGAAA GAGTCTGTTG AAGTACATTA AAGTAAAAGA GTGTGCTGCT GAAGCCGAAT TTCTTGATCC TGGGCCATCC TTCATCTTAC CTAATGTAGC TTGCAGCAAC TGTGATGCCT ACAGAGACCT AGATATATGC AGAGACCCAG TACTATTAAC AGAGAAAGAA TGGTCATGTG GAGATCCACA ATGTGGGAAG ATATATGACA GAGAGCAGAT GGAGAGTAGC CTTCTCGAGA TGGTGAGACA GAGAGAAAGA ATGTACCATA TGCAGGATCT AGTGTGCATT AGGTGCAATC AGGTGAAAGC GGCTCATTTG ACAGAGCAGT GTGAGTGTTC TGGTTCCTTT AGATGCAAGG AGAGCGGGTC AGAGTTCAGC AAGAGGATGG AGATCTTCTT GGATATAGCA AAGCGCCAGA AGTTTAGACT GTTAGAAGAA TACATCTCAT GGATCTTATA TGGCCCCAGC TATTAACAAA ACAATAGAGA AAGTCATC |
| Length | 6768 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 2928556.. 2944664 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G08260.1 |
| Description | DNA polymerase epsilon catalytic subunit |
| TAIR curator summary | Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. |
| Alias | [ABO4][EMB142][EMB2284][EMB529][ESD7][POL2A][TIL1][ABA OVERLY SENSITIVE 4][EMBRYO DEFECTIVE 142][EMBRYO DEFECTIVE 2284][EMBRYO DEFECTIVE 529][EARLY IN SHORT DAYS 7][TILTED 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.44949 |
Ahg472990 | DEAD/DEAH box RNA helicase family protein |
| 4.89898 |
Ahg925614 | chromatin assembly factor-1 (FASCIATA1) (FAS1) |
| 5.09902 |
Ahg332577 | DEK domain-containing chromatin associated protein |
| 5.47723 |
Ahg495764 | Insulinase (Peptidase family M16) protein |
| 6 |
Ahg479436 | homolog of RAD54 |
| 6 |
Ahg933711 | homologue of trithorax |
| 9.21954 |
Ahg487858 | methyl esterase 5 |
| 10.4403 |
Ahg488214 | Family of unknown function (DUF716) |
| 10.8628 |
Ahg485282 | Pentatricopeptide repeat (PPR) superfamily protein |
| 11.3137 |
Ahg484163 | AAA-type ATPase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|