Detail



ID : Ahg932624

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|932624|scaffold_400612.1
Sequence
TTGTTCCAAT TCATCTTGAC ATGGCGTCTA GAAGATTATC GAAGTCTGTT TCCGCAGCCA TCAAGGCACA CAATGCTCTT TCAAGACCTT CTATCCTCCT CCGGTCTCGC GCCCTCTCTG CCTGTGCTCA CTTCAGCTCG CGTTCCTCAT CCAATTCCTT TCTTTTCCGG CCAAACTCCT TCATCGGCGT TTCCGGAAAC GGCATAACTT CTTCAGCCAC TCAAGCCGCT TCTCGTGGCC AACTTTTACC TCTTTCTCTC CAATTCTCTT CTCCACGCAG CTTCTCTGAT AAATCAGATC AGACTGATGA TAATGATAAA GCACTTGAAA AATATGGAAG TGATTTAACG GAGATGGCTA AACAAGGAAA ACTCCCACCT CTCATTGGAC GTGATGATGA AGTTAACCGG TGTATCCAAA TACTATGCAG GATGACAAAA AGCAACCCTG TTATCATCGG TGAACCGGGT GTAGGGAAAA CCGCTATTGC AGAAGGGTTG GCCCAGAGAA TTGTAAAAGG GGATGTCCCT GAACCTCTCT TGAACCAGAA GGTTATATCT CTCGACATAG GTGCACTGAT TGCTGGTACC GAATATCGAG GGCAATTTGA GGAAAGGTTG AAAGCAATGT TGAATGAAAT AACTGCATCC AATGGCAAGA CAATATTGTT CATTGATGAA ATCCACACTA TTGTTGGTGC AGGAGCTTGT AAAGATGATA CAATGGATGT GAGCAACCTC CTAAAACCAA TGCTTGGAAG AGGTGAACTA CGATGCATTG GTGCAACTAC GCTAACCGAA TACCGCAAAT ATATGGAGAA AGATCCAGCT CTTGAACGTA GGTTTCAGAA AGTGTTCTGT AATCAGCCAT CTGTTGAAGA TACCATCTCG ATTCTTCGTG GGTTAAGAAA GCGGTATGAA TTACATCATG GTGTTAAGAT ATCAGATGGT TCTCTAGTTT CAGCAGCGGT TTTGGCAGAC CGCTACATCA CTGAACGCTT TCTTCCAGAC AAAGCTATTG ATCTTGTTGA TGAAGCTGCT GCAAAGTTGA GGGTTTTAAC CACTCCGAAA CCAACTGAAC TGGATGAAAT AAACAAAGCT GTGCTCAAAC TCGCGACAGA GAAGTTTTCT TTGCAAAGGG ATACTGAAAA AGCTTCTATA GAAGTTCTAC AGAAAATGAA TAAAGATTTG AGCAGGCTCG CGGATAAACG AAACAAACTC AGTAAGCAAT TGGAGCAAGA AAAGTCTCTC ATTACTAAAT TACGTTCATT TAAAGAAGAG ATCGATAAAT CCGAGGAACT TGAATGTGGT CTAAACGGTA CTGATGATCT TAAGTATGGA ACAATTATTT CTCTCCAACG CCAGTTAGAA GAAGCGGAGA AATATTTCAC CAATCCCGAA GATTCACTCC AAGGAGAGGT AACCGATGTC CACATAGCGG AGATAGTAAG CAAGTGGACC GGTATTCCAC TATCAAATCT TCGGCAATCA GAGAAAGAAA AGCTAGTCAT GTTGGAAGAA GTGCTTCACA AGAGAGTTGT TGGTCAAGAA AAGGCTGTAG AATCAATAGC AAATGCTATC CGTTGTTCAA AGGCTGGCCT ATCAGATCCT AACCGTCCAA TAGCCAGTTT TATGTTCATG GGTCCAACAG GTGTTGGTAA AACCGAGCTT GCCAACACTC TTGCTGGATA CCTTTTCAAC ACTGAAAACG CGATAGTGAG GATCGATATG AGTGAGTACA TGGAAAAAAA CTCAGTCTCA CGACTCGTTG GTGCACCTCC TGGTTGTGCT GGTTTTGAAG AAGGTGGGCA GTTAACTGAA GTTGTTCGGA GGAGACCTTA CTCGGTGGTT CTGTTTGATG AGATCGAGAA AGCACACCCG GATGTTTTCA ATATCTTTCT ACAGATACTA GATGATGGAA GAGTAACTGA TTCTCAAGGA AGGACTGTAA GTTTTAGAAA CTGCTTTGTA GTAATGACGT CGAATATAGG ATCACAACCC ATACTTGAGA CTTTCCGCAA CAATAAAGAT AGCAAAGAAG CTGTTTATGG GATGATGAAG CAACAAGCTG TGGAGTTAGC AAGACAGACT TTTAAGCCAG AGTTCATGAA TAGAATTGAC GAATACATAG TTTTCCAGCC GTTGGATTTA ACAGAATTAT CCAAAATCGT GGAGTTTCAG ATGAGACGAG TGAAGAATTT GTTGGAACAA AAGAAAATAA ATCTTGAGTA CACAAAAGAA GCGGTGGATC TACTTGCTCA GCTTGGGTTT GATCCCAACA ATGGGGCAAG GCCAGTGAAG AGAGTGATTC AGGAGATAGT GAAGAAGGAG ATCTCCTCAA AACTTTTGAA GGGAGAAATT TCAGAGGAAG ACACTATACT TCTCGATGTT GACCAACCTA ACAACAAATT GGTCATCAAG AAGCTAGAGA TTAATGCTCC TGTTGAAGAA TTGGCCCCAT AATCATACAA ACTTATTAAG ACG 
Length2483
Protein Sequence
Protein Residue
Map Locationscaffold_4: 3364631.. 3367978
Download Sequence
A.thaliana
AGI-codeAT2G25140.1
Descriptioncasein lytic proteinase B4
TAIR curator summaryEncodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.
Alias[CLPB-M][CLPB4][HSP98.7][CASEIN LYTIC PROTEINASE B-M][casein lytic proteinase B4][HEAT SHOCK PROTEIN 98.7]
Gene coexpression
MR
MR Locus Description
3.4641 Ahg319073 Domain of unknown function (DUF26)
13.8564 Ahg357682
14.5945 Ahg916656 cytokinin oxidase 2
20.199 Ahg491827 low-molecular-weight cysteine-rich 24
31.4325 Ahg496052 copper transporter 3
36.8239 Ahg347167 myb domain protein 0
50.7543 Ahg915037
52.192 Ahg936487
62.8888 Ahg945048
66.2495 Ahg934302
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression