| Annotation |
|---|
| Description | jgi|Araly1|947483|scaffold_703712.1 |
| Sequence |
GTGAGCAGTC AGAGCGCAAG AGATATGGAA AATGTCTTGA GAGATCATCC TCCACCACCC TGTGATGGAG CTAATCTTGA TCTGGGACTC AGTCTAAGAG AGATATGTGC TGCTCATAGA TCTAACGAGA AACAGCAAAT GAGAGCACTT TTAAGGAGTG TTGGGCCAAG CTTTTGCCCT AGTGACGTGG ATTGGTTTGG AGATGAATCT CATCCGAAAA ATGCTGACAA ATCTGTTATA ACAAAATTCC TGCAATCTCA GCCTACTGAT TATTCAACTA GTAAATTACA GGAAATGGTA CGCTTGATGA AGGAAAAACG TCTTCCAGCC GCATTCAAAT GTTACCATAA TTTTCATAGA GCTGACGACA TATCACCTGA TAAACTATTT TATAAATTGG TTGTTCATGT GCACAGCGAT TCAGGATTTA GGCGTTACCA AAAAGAGATG AGGCACATGC CTAGTTTGTG GCCTTTATAT CGAGGTTTCT TTGTTGATAT TAATTTGTTC AAGTCAAACA AAGGGAGGGA TCTGATGGCT CTGAAAAGCA TTGATAATGC GGTCAAAGAT GCCAGTGAAA ATGATGGTCA ACGAGAAAAG GATGGTTTGG CTGATGGTGA TGCTAACTTA ATGATCAAAT TAAAGTTTCT CACATACAAG TTGAGAACCT TTTTGATCCG TAATGGCCTA TCAATTCTAT TTAAAGAAGG GCCAGCAGCT TACAAAACCT ACTATCTTAG ACAAATGAAA ATCTGGGGTA CGTCAGATGG AAAGCAGAAA GAACTTACCA AGATGCTTGA TGAATGGGCT GCTTACATAA GAAGAAAGTG TGGGAATGAT CAGCTATCTT CATCAACATA CTTAAGTGAA GCTGAGCCAT TCTTGGAGCA GTACGCGAAG CGGAGCCCAA TGAATCAGAT TTTGATAGGG GCTGCTGGGA ACCTAGTTAG AACTGAGGAC TTCTTGGCCA TTGTGGACGG TGATCTAGAT GAAGAAGGCG ATCTTGTGAA GAAAGAAGGA GTGACACCAG CTACTCCTGA GCCAGCTGTG AAGGAAGCTG TCCAAAAGGA TGAGGGGTTA ATTGTATTCT TTCCAGGGAT TCCTGGATGT GCTAAATCTG CACTTTGCAA GGAGTTATTG AACGCCCCAG GAGGCTTTGG AGATGATAGG CCAGTGCATA CTCTGATGGG TGATCTTGTC AAAGGAAAAT ATTGGCCAAA GGTTGCTGAT GAACGTCGTA AAAAACCACA ATCGATTATG TTGGCTGACA AAAATGCTCC AAATGAAGAT GTCTGGAGAC AAATTGAAGA CATGTGTCGA AGAACTAGGG CTTCTGCAGT TCCAATCGTT GCTGATTCTG AAGGAACCGA TACAAATCCA TATTCACTTG ATGCCTTGGC TGTATTCATG TTCCGGGTAC TTCAACGAGT TAACCATCCG GGAAAGCTCG ACAAGGAATC TTCAAATGCA GGCTATGTGC TATTGATGTT TTATCACCTT TATGAGGGAA AGAACCACAA TGAATTTGAG AGTGAATTGA TTGAGCGCTT TGGCTCCCTC ATCAAGATGC CACTATTGAA ATCAGACAGG ACTCCTTTAC CTGATCCTGT TAAATCAGTT CTTGAGGAGG GCATAAATTT GTTTAATCTC CACAGCAGAA GACATGGGAG ACTCGAGTCG ACAAAAGGAA CATATGCAGC AGAATGGACC AAATGGGAGA AACAACTACG AGATACTTTA GTTGTGAATT CTGAGTATCT CAATTCTATT CAGGTTCCAT TTGAGTCTGT GGTTCATCTA GTGCGAGAAG AGCTAAAAAA TATCGCAAAG GGTGAATACA AGCCACCAAG TTCAGAGAAA ACAAAACATG GGTCTATTGT TTTCGCTGCC ATCAACTTGC CTGCTACTCA AGTTCACAGT CTTCTTGAAA AGTTAGCCGT AGCAAACCCA ACAATGAGAT TTTTTCTAGA GGGTAAGAAA AAGACCATAC AGGAAAAACT TGAACGGTCT CATGTGACGC TTGCCCACAA GAGAAGCCAT GGCGTAGCAG CTGTAGCCAG CTATGGTCAG CACTTGAACA GAGAGGTACC CGTAGAGCTC ACGGAGCTCA TCTACAACGA CAAGATGGCA ACTCTAACTG CCAATGTCGG ATGTGTGGAC GGAGAGACGG TAGTCTCCAA GAACGAATGG CCACATGTTA CGTTGTGGAC TGGAGAAGGC GTAACTGCGA AAGAGGCCAA CACGTTACCT CAGCTTTACT TAGAAGGGAA GGCGAGCCGC TTAGTGATAG ATCCTCCGGT CTCAATCTCA GGTCCTCTGG AATTTTTCTG AATATTTATG AAACATGGAA G |
| Length | 2351 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 19878246.. 19883913 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G07910.1 |
| Description | RNAligase |
| TAIR curator summary | Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains — an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component— that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo. |
| Alias | [AtRLG1][ATRNL][RNL][AtRLG1][ARABIDOPSIS THALIANA RNA LIGASE][RNAligase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 68.8331 |
Ahg934838 | Integrase-type DNA-binding superfamily protein |
| 74.1755 |
Ahg330810 | crooked neck protein, putative / cell cycle protein, putative |
| 83.3307 |
Ahg907629 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|