Detail



ID : Ahg948606

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|948606|scaffold_800493.1
Sequence
GTATGAAAAC AGAAGTAGAA GATGAAAGAT TCAGGAAGTG AAATGATTAA TAGAGATTGG GTCATGAAGC AGAAACGAAG AAAACTTCCG TCTATACTGG ATTTATTAGA CCAAAAAGTG GATAGTTCAG TGGCTTTTGA TTCTTCGGAA TACACTTCTT CCGCTAAACC AACTAAGCAT CGGCTTAAGA CTGATTTAAC TCCTGAAAGG AACTCCTCTA AGAGGAAGGG AAATGATGGG AATTATTTTG AATGTGTGAT CTGTGATCTT GGTGGTGATT TACTGTGTTG TGATAGTTGT CCTCGGACCT ATCATACCGC ATGCCTCAAT CCACCTCTTA AGAGGATTCC AAATGGTAAG TGGATCTGCC CAAAATGTTC CCCAAACAGT GAAGCACTCA AGCCTGTCAA TCGTTTAGAT GCCGTTGCTA AGCGAGCGAG AACAAAAACC ACGAAAAGAA ATTCACAAGC CGGACCAAAG TGCGAGAGAG CTTCTCAGAT TTATTGCAGT TCTATAATTT CTGGAGAACA ATCTTCAGAG AAAGGGAAAT CTATATCGGC CGAAGAGAGC AAATCCATAG GAAAGGAGGT TTATTCTTCC CCTATGGATG GCTGTTCAAC TGCTGAGCTT GGCCATGCAT CTGCGGATGA CCGACCCGAT TCATCGTCTC ATGGAGAAGA TGATTTGGGG AGACCTGTCA TACCCACTGC AGATCTGCCT TCTGATGCAG GATTAACTTT GCCGTCCTGT GAAGATCTCT CCGAATCTAA ACTATCAGAT ACGGAGAAAA ATCTTGAAGC ACCCGTGGAA AAGTTGGAAC ATGCTTCCAG CGAGATTGTG GAAAACAAGA CAATTGCTGA AGTGGAGACT GGAAAAGGTA AAAGGAAAAA ACGGAAGCGT GAACGAAATG ATGGGGAAAG TCTTGAAAGG TGCAAGACTG ATAAGAAACG TGCGAAGAAA AGTTTGTCCA AAGTGGGTTC TCAGAGTACC AAATCACCGG AGTCTTCGAA AAAAAAGAAA AAGAAAAATC GTGTGACATT AAAATCCTTG TCCAAACCTC AGTCCAAGAC AGAAATACCA GAAAAAGTGA AGAAGCTTCC CAAGGAGGAA CGTCGAGCAT TACGTGCCAC AAATAAATCT TCTAGTTATT TGGATGAGAA AAGCTCTCTT CCGGCTGTAA ACCTCCAGGT TGATCGTGTT TTAGGATGCC GAATCCAAGG TCTGACTAAA ACCTCGCTGT GTAGTGCTCT TTCAGATGAC TTGTGTTCTG ATAATTTACA AGCTAATGAC CAGCGGGATA GCTCAGTACA AGATACAAAT GCTGAATTAG TAGTTACTGA GGACAAGACA GAATCTTCTT CTGAGACTGG TAAAAGTTCC AAGGGTTCAC GACTGAAGGA TAAAGATATG GATGAATCTG CTTTAGGTAC TGAGGGTATG GTTGAAGTGA AAGAAGAGAT GCTTTCAGAA GACAATTCTG ATGCCACATT GAGTAGACAC GTGCATGATG AAGATATGAA AGTTAGTGAA ACACCTGTAT CTGTTGAGAG GGAGTTACTT GAAGAAGCAC ATCAGGAAAC AGGGGAACAA TGCACTGTGG CTGGTGAAGA AGTTGAGGAG CCTGTTGCTG CTAAAACTTC AGATCTGATT GGTGAGACTG TATCATATGA ATTTCTTGTT AAATGGGTGG GAAAATCTAA TATTCATAAT ACTTGGATTT CTGAGGCGGA ACTAAAAGGT CTTGCTAAAA GAAAACTAGA GAACTACAAA TCAAAGTACG GAACAGCTGT AATAAATATC TGTGAAGATA AATGGAAACA GCCTCAGCGA ATAGTTGCTA TTCGGGTTTC AAAAGAAGGT AACCAAGAAG CTTACGTAAA ATGGACAGGC TTGGCTTATG ATGAATGCAC GTGGGAGAGC TTGGAGGAGC CTATTCTTAA AAATTCATCC CATTTGATAG ATCTTTTTCA TCAGTATGAG CAGAAAACAT TGGAAAGGAG TAGTAAGGGT AATCCCACAA GGGAAAGGGG TGAAGGTCAG CAAAGTGAAG TTGTTACCCT CACAGAACAA CCTCAAGAGC TCAGAGGAGG TGCCTTGTTT CCCCATCAGC TTGAGGCGTT GAATTGGCTG CGTAGATGCT GGCATAAATC GAAAAATGTA ATACTTGCTG ATGAGATGGG GCTTGGAAAA ACAGTGTCTG CTAGTGCATT TCTCTCCTCA CTGTATTTTG AATTTGGAGT TGCAAGACCT TGTTTAGTTT TGGTTCCTCT TTCAACAATG CCAAACTGGC TATCCGAGTT TTCTCTTTGG GCTCCACTCC TTAATGTTGT GGAGTATCAT GGAAGCGCAA AAGGGCGAGC CATAATTCGA GACTATGAGT GGCATGCTAA GAATCCTACT GGGACGACCA AGAAGCCTAC ATCTTACAAA TTTAATGTCC TTTTAACTAC TTATGAAATG GTCCTGGCTG ACTCATCTCA TCTACGTGGA GTTCCATGGG AAGTTCTTGT GGTTGATGAA GGTCACCGTT TAAAGAATTC AGAAAGTAAG CTGTTTAGCT TGCTCAACAC ATTCTCATTT CAACACCGTG TGCTTTTGAC TGGCACCCCT CTTCAAAATA ACATTGGTGA GATGTATAAC CTGCTCAACT TCTTGCAACC ATTGTCATTC CCTTCTTTGT CTTCTTTTGA GGAGAGGTTC CATGATTTGA CAAGTGCTGA GAAAGTAGAG GAACTGAAGA AACTTGTTGC TCCTCATATG CTTCGCCGGC TTAAAAAAGA TGCCATGCAG AATATTCCTC CAAAGACAGA GAGGATGGTC CCTGTCGAGT TGACATCAAT CCAGGCGGAA TATTATCGTG CAATGCTAAC TAAGAACTAT CAGATACTAC GAAATATCGG GAAAGGGGTA GCGCAACAAT CAATGCTTAA CATAGTGATG CAGTTGAGAA AGGTTTGCAA TCACCCATAT CTCATACCAG GTACTGAGCC GGAGTCTGGG TCATTGGAGT TTCTTCATGA TATGAGAATA AAAGCGTCAG CCAAGTTGAC CCTGTTGCAC TCTATGCTTA AAGTGCTACA AAAGGAAGGC CATAGAGTTC TGATATTTTC ACAGATGACA AAGCTTCTAG ACATTCTGGA GGACTACCTG AACATAGAAT TTGGGCCTAA AACATTTGAA AGGGTTGATG GTTCTGTTGC GGTAGCTGAT CGTCAGGCAG CTATAGCACG TTTCAACCAA GACAAAAATC GGTTTGTTTT TCTGTTATCA ACACGTGCCT GTGGTCTTGG TATCAATCTG GCAACGGCTG ATACTGTCAT CATCTATGAC TCTGATTTCA ACCCTCACGC TGATATTCAA GCAATGAATA GAGCTCATCG AATTGGACAA TCCAAACGAC TTTTGGTATA CAGACTTGTC GTCCGTGCCA GTGTTGAAGA GCGCATTTTG CAGCTGGCCA AGAAGAAGTT GATGCTCGAT CAGCTTTTTG TAAACAAGTC CGGATCCCAG AAGGAGTTTG AAGATATTCT ACGCTGGGGT ACTGAAGAAC TGTTCAACGA CTCCGCTGGT GAGAACAAGA AAGATACAGC TGAAAGTAAT GGAAACTTAG ATGTAATCAT GGATTTAGAA AGCAAGAGCA GGAAAAAAGG TGGTGGTCTC GGAGATGTTT ATCAAGACAA ATGTACAGAA GGAAATGGGA AGATTGTTTG GGATGAGATT GCAATTATGA AGTTGCTTGA CCGGTCAAAT ATTCAATCAG CCTCCACTGA TGCCGCTGAT ACTGAGTTGG AGAATGATAT GCTCGGCACC GTAAAGCCTG TGGAATGGAA TGAGGAAACG GCTGAAGAAC AAGTTGAAGC TGAATCACCT GCTCTGGTAA CTGATGATAC TGATGAACAG AGCTCAGAGA GGAAAGATGA TGATGTAGTT AATTTTACTG AAGAAAATGA ATGGGACAGG CTTCTGCGTA TGAGATGGGA GTTTCCTCTT TCTCTGAGTT CAGCGACTTG GCTCTGTTAT TTCTTTGGTC TTGGCATCAT CTGTTCTTGT TTTCACTGCT TATTACTTAA ATATCAGAGC GAGGAAGAAG CAGCACTTGG TAGAGGGAAG CGTTTGAGAA AGGCTGTTTC ATACAGGGAA GCATATGCCC CACATACCAG TGGACCTGTA ACTGAGAGTG GTGGTGAAGA TGAGAAAGAA CCAGAACCGG AACTTAAGAA AGAATATACA CCTGCTGGGC GAGCCCTAAA AGAAAAGTTT GCCAAGCTGC GAGAGAGGCA AAAGATCCTG ATTGCAAAAA GGAATTCTGT TGAAGATTCT CTTCCTAACT GCAATGTGGA TCAGGTAGCT AATCAGGACG AAGAAAGCCC TACATCAATG GACTTGGACG ATAGCAAAGC CAGCCAGCAA TATGATGCAC ATAGAAAAGC CAGCTCGTTA AGGCTAGAAA GTTCTTCAGA TCCTAAACCA GATCTTCCAA GCCATCATCA TGGCGCAGAA TGTCTGCCAT CTTTACCCCC AAACAACCTG CCAGTTCTTG GACTGTGTGC TCCTAATTTT ACTCAATCTG AATCCTCCCG GAGAAATTAT TCTCGTCCAG GTAGTAGACA GAACAGAACC ATAACAGGAC CCCATTTTCC CTTCAATCTA CCCCAAACAT CGAACTTGGT TGAGAGGGAT GCAAATGACC AGGAACCTTC TTTGGGTAAA CTAAATCCAC AGAACGTAAA GGAAGAACCT TTTCAGCAGC CTCTTAGTAA TCTGGATGGC TGGCTTCCAC ATCGTCAGTT TCCTCCGTCA GGGGATTTTG AGCGTCCCCG AAGCTCTGGT GCTGCTTTTG CTGATTTCCA GGAGAAGTTT CCGCTACTTA ATCTTCCATT TGATGATAAG CTGCTTCCTC GATTTCCATT TCAGCCGAGA ACCATGGGAA CTTCCCATCA AGACATCATG GCTAATCTTT CAATGAGGAA AAGATTTGAA GGTACTGGTC ATTCTATGCA AGACCTATTT GGCGTACCAT CAATGCCGTT TCTACCCAAT ATGAAAGTCC CTCCTATGGA TCCACCTGTC TTCAGCCAAC AAGACAAGGA CTTACCGCCT TTGGGTTTGG ATCAGTTTCC ATCAGCTCTT TCATCTATCC CCGAGAACCA TCGAAAGGTG CTGGAGAATT TAATGCTAAG AACTGGTTCT GGAATTGGGC ACTCACAGAA AAAGAAGACA AGAGTAGATG CATGGTCCGA GGATGAACTA GATTCTCTCT GGATTGGGAT TCGCAGACAT GGGTATGGAA ACTGGGAGAC AATTCTCAGA GATCCAAGGC TAAAATTTTC GAAATTTAAA ACACCAGAGT ACTTAGCAGC AAGGTGGGAA GAAGAGCAAC GTAAATTCTT GGATAGTCTT TCATCTCTGC CATCTAAATC AAGCAGGACT GATAAGTCCA CCAAATCTTC CTTGTTTCCT GGTCTTCCCC AAGGAATAAT GAATCGGGCT TTACATGGAA CTAAATATGC CACTCCTCCA AGGTTCCAAT CTCACCTGAC AGACATAAAA CTCGGATTCA GCGATCTAGC ATCTCCCCTT CCGTTATATG AACCATCTGA TCACCTGGGA TTTCGAAGTG AGCCTTTTCC TCCCATGGCA AATCTGTGCA CTGACAATCT TCCTGGGGAT CCTTCTGCTG GACCATCTGA ACGACCAGGG GCATCGACAA ATATTCCCAA CGAGAAGCCT TTTCCACTCA ACTCTCTTGG AATGGGCAAC TTAGGTTCAT TGGGTTTGGA TAGTTTAAGC TCCTTAAACA CACTGAGAGC GGATGAAAAA CGGGATGCTA TTAAGCGCGG GAAATTACCC TTGTTTCTAG ATATGCCGTT ACCTCCAATG CTTGATTCAA GCAACAATGT GTTCTTGGGA AGATCAGCCA ATCCATCTTT CCTTAATCCA AACCGAGGGT TGAATCTCTC CAATCCTATG GGGAGAGACA TTTTGGGAAT TAGCTCTTCA GAGAACAAGC TACCTCATTG GTTACGCGAT GTTGTGACTG TTCCTACCGT GAAGTCACCT GAACCACCCA CTCTACCTCC AACTGTGTCA GCTATAGCTC AATCAGTCCG CGTTTTATAT GGCGAAGATT CTACCACCAT TCCACCGTTT GTGATACCAG ACCCGCCGCC TCCTGCTCCT AGAGATCCAA GACACAGTCT GCGTAAGAAA AAGAAACGTA AATTGCATTC ATCGAGTCAA AAGACTACAG ACATTGGTAG TAGCAGCCAC AATGCTTTTG AAAGCAGCTC TCAAGGCCAT CCACAAACAT CCTCAACTCC TCATTTGCCT CCATCGTCTC TAGCGGGGGA AACTTCAGGG TCTTCTCAAC CCAATTTACC TCCTCACAAC CTAAACAGCA CAGAACCACT GTCCTCTGAA GCAATCAGAT TTCCACCACT TGAAGAAGAT TTTGTGATAG CAGCAGTACC ATCTGAAGCA CCTGGGCCTA GTTTAGAGGG AATCACTGGT TCGACGAAGT CAATCTCGCT AGAGAGCAAA AGCTCTGAAC CAAAATCTAC CAACCAAGAT GGAGACTTAG ATCCAGAAAC TAATGAGAAA ACTGAGTCTG ATCGAATCCC GCTTCATTCA GATAAGCCTT TAGATGAGAA ACAAGAATCT GAAAATGCAT TGAACAAGCA GGCTAAAAGT CAAAACACCA ATGCAGAAGA AGCAGAAGCA CAACAAGAAG AAGAATCCAT GAAGATGGTT TCTGATAATT CTCCTGGTGA CGATTGAAAT CTTCGATCGA ATTGCATT 
Length6798
Protein Sequence
Protein Residue
Map Locationscaffold_8: 2723406.. 2729574
Download Sequence
A.thaliana
AGI-codeAT5G44800.1
Descriptionchromatin remodeling 4
TAIR curator summary
Alias[CHR4][PKR1][chromatin remodeling 4][PICKLE RELATED 1]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg491547
1.73205 Ahg483746 transcription regulatory protein SNF2, putative
4.24264 Ahg479152 response regulator 1
4.24264 Ahg340742 Cystatin/monellin superfamily protein
5.74456 Ahg479273 tetraticopeptide domain-containing thioredoxin
7.07107 Ahg479149 TOPLESS-related 2
7.34847 Ahg496212 PDI-like 1-4
8.48528 Ahg476843 exocyst complex component sec5
8.88819 Ahg493070 CheY-like two-component responsive regulator family protein
9.16515 Ahg484006 Tudor/PWWP/MBT domain-containing protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression