Detail


ID : Ahg319764

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|319764|fgenesh1_pm.C_scaffold_3002780
Sequence
ATGGCTGGGA TAGGATCATC AAGAAACAAC GAAGAAGACA ATCAACAAAA CACAAACTGG GTTTGGTACA GAAACGCCAA TAATAACCCA AGTACGAGCC ACAACAATCA GATATGGCAG CAGCCAAGCC TGGATCTATA TCCGGGTCAG ATCGACGTCT GTGATTTGAC CACGTCATCC AGATCCCTAA CCATAAGCTG TCAAGACTGT GGAAACCAAG CCAAGAAAGG GTGCACGCAT GGACGGTGTA GAACTTGCTG CAAGAACCAC GGGCTCCACT GTCCTACTCA CGTTAGGAGC ACGTGGATCC CCATCGCCAA ACGCCGCGAG CGGCAGCAGC AGATACAGAC GCCAATCTCC AACCGAAATG GCGGTGGCGA CAGAGTTGGG AACATCCCAA CACCGTATAG AGAGATTGAT CAACCGGCTA ACTCATCAGG GTTAGAGATG GGAGAGGCAA CATTTCCAGA TGAAGTGAGC TCGGATGCAC TTTTCCGGTG CGTCAGAATG AGTGGTACCG ATGATGGAGA GGGCCAATAC GCATACCAAA CGACGGTGGG CATAGCTGGC CATCTCTTTA AGGGAATTCT ATATAACCAA GGTCCGGAAA ACATGTCCAT GCCTTAA
Length627
Protein Sequence
Protein Residue
Map Locationscaffold_3: 21247494.. 21248436
Download Sequence
A.thaliana
AGI-codeAT2G18120.1
DescriptionSHI-related sequence 4
TAIR curator summaryA member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Alias[SRS4][SHI-related sequence 4]
Gene coexpression
MR
MR Locus Description
24.8193 Ahg908424
32.5269 Ahg890488 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
76.138 Ahg941275 Protein of unknown function (DUF1005)
76.2627 Ahg901619 nodulin MtN21 /EamA-like transporter family protein
81.6823 Ahg315656
92.2226 Ahg948045
97.1494 Ahg887665 P-loop containing nucleoside triphosphate hydrolases superfamily protein
99.905 Ahg930642
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression