Detail



ID : Ahg322444

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|322444|fgenesh1_pm.C_scaffold_4002501
Sequence
ATGTACCGAT CGTGTGGAAC ATACATTGCT TTCATCACTA TTCTCATAAG TGTATACCTG GTCAAACCCA ATTATGTATC ATTTGGATAT ATTTTCCTTC TCTTGCTCTG GATTACTGGA AGACAACTGT TTGAAGAAAC TAAGAGACGC TTGTGGTTCC CTTTGAAAGC ATATGCAGTT TTGGTGTTTA TGTTTATCTA CTGCTTAAGT AGCTTTGTCA GCTTGCAGCT TTGGTTATCT GGATTCATTG ATCTCTACTT TTATTTGGGT TACAACTCTA AAGCCCCATT GCTGGATAAT GTCTGGGAAT CTCTTGCTGT GTTGATCGTG ATGCAACTTT ACAGCTATGA AAGGAGGCAG AGTGGACACT ACGTTCCAGG TCAATCTAGT TTGCTTCATC CTGGAGTTTT TGGTTTTTTT GAGAGATTTT TGGTATGGCA TGGTCAGAAG ATCTTGTTCG TGGCATTGTT TTATGCATCA TTGTCTCCGA TTAGTGTGTT TGGATTTGTA TATCTCCTTG GCCTTGTCAT CTGCACAACC TTCCCAAAGT CTTCTTCAAT ACCATCCAAA TCATTCTTGA TTTATACTGG ATTTCTAGTG TCTGCGGAGT ATCTTTTCCA ACTGTGGGGC ATGCAAGCTC AGATGTTCCC TGGGCAAAAA TATGCTGAGT TGTCTTTCTA CTTGGGGCTT CGAGTATATG AACCTGGATT TTGGGGTATA GAATCAGGTC TACGAGGAAA AGTGCTGGTT GTTGCTGCCT GTACTCTGCA GTACAATGTA TTTCGTTGGC TAGAAAGAAC ACCTGGTTTA ACTGTTATCA AAGGAAAATA TGAAGAGCCG TGTCCACTAT TTGTCTCTGC AGAAGACACT ACTGCAAGTG TTTCCAGTTC TAATGGTGAA AATCCATCTT CGACTGATCA TGCTTCTATA TCAATGAAAC AAGGCGAGGC AACGAGTAAC TCATGGCCTT TCTTCTCTCC CCATGATAAT CAGGGAGCTG GTTTTTTGCA CCCCAAGACT GGAGGCTCTG AAAGTGGCAG TAGTAGGAAA TTTTCATTTG GTCACTTCTG GGGAAGCATC AAAGAGAGTC ACAGGTGGAA CAGGAGGAGA ATTCTTGCAT TGAAGAAGGA GAGGTTTGAA ACACAGAAGA ATCTGTTGAA AATTTACTTG AAGTTTTGGA TAGAGAATAT GTTTAATCTC TATGGCCTTG AGATAAACAT GATTGCGCTG CTTCTTGCGA GTTTTGCTTT GCTGAATGCC ATCTCCATGG TATATATTGC ACTGCTTGCT GCATGTGTCC TCTTGAGAAG ACGCCTAATT CAGAAACTAT GGCCTGTCGT TGTTTTTCTG TTTGCATCAA TTCTTGCAAT TGAGTACGTT GCCACATGGA ATAGCTTTTT GCCTTCAGAT CAGGCTCCAA GTGAAACTAG TGTGCATTGC CATGACTGCT GGAGTATTGC AGCCCTCTAC TTTAAATTTT GCCGGGAGTG TTGGCTTGGA GTGAGAGTGG ACGACCCCCG GACTCTTATT AGCTATTTTG TGGTATTCAT GCTTGCCTGT TTCAAACTTC GGGCTGATCA CATATCCAGT TTCTCAGAGT CATCGACATA TCATCAGATG AAGTCTCAAA GAAAGAACTC ATTTGTCTGG AGAGATCTCT CCTTCGAGAC AAAGAGCATG TGGACTGTGC TTGATTACCT GAGGCTTTAT TGTTATGTCC ATCTGCTGGA TGTTGTGCTT ATTCTGATTT TAATCACAGG AACTCTTGAG TATGACATTC TACACCTGGG TTATCTTGCA TTCGCTCTTG TTTTTGCCCG AATGAGACTT GAAATACTGA AGAAGAAAAA CAAAATATTC AGGTTCTTGC GGGTGTACAA TTTTGTTCTC ATCATCTTTT CTCTCGCATA TCAGTCTCCA TTTGTTGGAA ACTTCAATGA TGGAAAATGT GAAACCGTTG ATTATATATA CGAGGTGATT GGATTTTACA AGTATGACTA TGGATTTCGA ATCACTGCAA GATCTGCTCT CGTTGAGATC ATCATATTTA TGCTAGTATC TCTTCAGTCC TACATGTTTT CCTCCCAGGA GTTTGATTAT GTGTCGCGGT ATCTTGAAGC AGAGCAAATC GGTGCTATTG TGCGGGAGCA AGAGAAGAAA GCAGCACGGA AGACCGAGCA ACTGCAACAA ATTCGTGAGG CTGAGGAAAA AAAACGGCAG CGGAATTTGC AGGTGGAAAA GATGAAATCT GAAATGCTGA ACCTGCGGGT ACAGCTTCAC AGAATGAATT CTGATTCTAA TTTTGGAGTC GCTTCTCCGC GCACTGAAGG TCTAAGAAGG AGGAAGAGTC CGTATCTAAT TCCAGATAGT GGTGCAGCCA GTCCTGAGAT TGACGGAGTG GTCCACAGGA AAGAAGAGCA GCCTATTGAC GAGGAGTCAC AGTATCCTTT TGAAGCGCAT GAGTTTCCAG TGAGTACCAC TCCAGAAGCA CTAGATTCTC CAGAGTATAT ATTTGGAGCA TCTCCTTGTG AGATAACTGA AGTTCAACAG GATCTTGATG TGATGTCTAT GGGACGTGAA AGAAAGGAAA AGTCCGAGGG AAAGGAGAAT CCGTTGATTT CTGCGGTGCA ACTCATCGGT GATGGTGTTT CCCAGGTACA ATTTATTGGA AATCAGGCAG TAAATAACCT TGTGAATTTC TTAAACATAT CGCCGGAAAA TTCAGATACA AATGAGCAGT CTTCTGTTGA TGATGATGTG TATGATGAAA TGGAAAGTCA GAAAAGAAAA CACACGCCTT TCGAACGGTC AACATCTCTA CAATCTGACA GGAGTAGTGA TGGCACTAGC TTTCAGATAG GAAGGATCTT TCGTCATATA TGGTCTAGGA TGCAGTCCAA TAACGATATT GTTTGCTATT GCTGCTTCAT TATTGCGTTT CTCTGGAATT TCAGTCTTCT TTCCATGGTC TATCTAGCAG CACTGTTCCT ATATGCCCTC TGCGTTCACA CTGGCCCTAC TCACATCTTC TGGGTCATCA TGCTAATGTA CACAGAAATT TATATCCTGC TCCAGTATTT ATACCAGATT ATAATCCAGC ACTGTGGGTT AAGCATTGAT GCACCTCTTC TTCATGAATT GGGATTTCCA ACGCAAAGAA TCAAATCATC ATTTGTTGTC AGCTCGTTGC CTCTATTCCT TATTTACATA TTTACTCTCA TACAGACTGC TATAACAGTG AAAGATGGTG ATTGGGTTCC TTCTGCTGAT TTTACTTCGC GCCGGAATGC CCGTGGTAGC CAGAAGGATC TTACAAGAAT TAGCTTGAGC CAGAGAATCT TGGATGTGTT CAAGAAGCTA AGAGATAGTG GGAAGCTGGT GATCAGGAGC ATCTGCCGAT ACTGGATATC TCTGACACGT GGAGCAGAAT CCCCTCCTTA CTTTGTTCAG GTGACAATGG ATGTTCACAT GTGGCCTGAA GATGGAATTC AGCCTGAAAG AGTTGAATGT AGAATGAATC AGTTGCTTAG GCTTGTCCAT AATGAGAGAT GCGAGAAAGG AAACCCTGAT CTCTGCCCTT ACTCTAGCAG GGTTCACGTA CAAAGTATAG AGAGGAGTAC AGAAACCCCA AACGAGGCCT TAGTTGTTTT CGAGGTTGAG TATGCTTCTC CCACGAATGG GTGTTCTTCA GCAGAATGGT ACAAATCACT TACCCCAGCC TCGGATGTGG CGAAAGAAAT TCGTAAAGCT CAACATAGTG GACTTGTTGA AGGAACTGGA TTTCCATACC CCATTCTCTC TGTGATTGGC GGAGGAAAGA GAGATACTGA CCTCTATGCC TACATATTTG GTGCTGACTT GATAGTCTTC TTTCTGGTTG CCATTTTCTA CCAATCAGTC ATTAAAAATA AAAGCGAGTT TATTGATGTA TATCAGCTAG AAGACCAGTT TCCATTTGAC TTTGTCATTA TTCTTATGGT TATCTTCTTC CTAATTGTTG TTGATCGCGT CATCTATCTT TGCTCATTTG CGACTGGAAA AGTGGTATAC TATCTCTTCA GCCTTATTCT CTTCACATAT GCAGTGACAG AGTATGCTTG GAGCATATAT CCTACCCAGC AACACGCTGC TGGCTTGGCT CTCAGAATCA TATTTCTTGC CAAAGCAATG TCACTAGCTC TCCAAGCCAT ACAAATCCGC TATGGACTAC CTCATAAAAG CACCTTGTAT CGGCAGTTTT TGACAAGTGA AGTTTCACGG ATCAATTACT ATGGTTACAG ACTTTACCGT GCTCTTCCCT TCCTGTATGA ACTGAGATGT GTGCTTGACT GGTCTTGCAC AGCTACATCA CTGACAATGT ATGACTGGCT CAAGGTATAT CGTCTGATCC CATGCATTTG TTTTCTGGAA CCCTTGCTAT GA 
Length4422
Protein Sequence
Protein Residue
Map Locationscaffold_4: 22077860.. 22082476
Download Sequence
A.thaliana
AGI-codeAT2G48060.1
Description
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
1.41421 Ahg492998 SCAR family protein
3.74166 Ahg474021 Plant protein of unknown function (DUF639)
4.79583 Ahg322445
7.93725 Ahg474789 embryo defective 3012
10.9545 Ahg335224 Pentatricopeptide repeat (PPR-like) superfamily protein
12.2474 Ahg487274 Glycosyl hydrolase family protein
14.1421 Ahg921800 Nucleotide-diphospho-sugar transferases superfamily protein
14.6969 Ahg486560 SEC7-like guanine nucleotide exchange family protein
15.5885 Ahg943448 Transducin/WD40 repeat-like superfamily protein
19.8746 Ahg895977 RNA polymerase II transcription mediators
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression