| Annotation |
|---|
| Description | jgi|Araly1|492998|fgenesh2_kg.7__2431__AT4G18600.1 |
| Sequence |
ATGCCGTTGG TGAGGTTCAA GATACGGAAC GAGCTAAGCT TAGGTGGGCC GGAGATTCAA CGTAGCGCCG CCGTGGAAGA TGAAGAACCT AAGGCGATTC TCGGCGCTGT TGAAGTGGCT GGACTCATCG GTATCCTTCG TCAGTTAGGC GATCTCGCTG AATTTTCCGC AGAAGTATTT AACGGCTTAC AAGAAGAAGT AACTGTAACG GCATCTAGGT GTCAGAAGTT GACAAGCCGT GTTAGACGGA TAGAGTCAGC GCTTTCACCT CTTGAAAAGG CTGTTCTCTC ACAGACAAGC CACATACATT TTGCATACAC AGCAGGCTCT GAGTGGCATC CTCGTATAAG GAATGGACAT AGTCATTTTG TTCAGAGTGA TTTACCACTG TGTGTTATGG AAAGTTATGA ACAATGCAGA GATCCTCCTC CGTTGCATCT GCTTGAACGA TTTGCCGAAG GTGGTCCTGG ATCGTGTCTG AGAAAATACT CAGACCCAAC ATTCTTTAGA AAGGAATTAA GCAACCCCAG TAAAACAGAT GATATCAAAG TCCAGAGAGA TCAGGCTCAC CGCAAAAGAA AGAAAAAGAG GTTACCACAA AGAAACATTT GCAGATCAAA TGCAGTGTCT ACATCTGACG AAACTAGTGG GGCTCATCTC AGTAATCTTA CTGATGACAG ACAAACAACT TCTCAGAGTA CGTCCACAGT TGACATGCCA CGTAGCTCTA ATATGCAAGA TTTATCTGAT ACTGTAGACC AATCTCATCT GCAAGGGCAG TCAGATGCGC AAGAACGAAG TGAAGCACAA GTACAATCAG ATTTCCAAGA GTCATCAAAA GCTCGCGATT CTATAACTGG TTCAGGTTAT ATCGAGTATG TCATCAATCA AAGTCCTGTT AATGAACCTG ACGTGAAGCT AGTAGAAGGA TTTCTGTCTG GGTCCTTACA ACCTGCTGAT AGAATAGGTT CAGCTGTTCC TGCAGGCTGC ATTGAAGTTG TAGATGATAA TATCCTATAT AGCCCCTCAG AAGACCTACA TGTGCCTTGT GCTTCTATTG TTTGTGATGA GAAGAAAGAA ACACTTGAAT CAATGGTGGA GAAAAGCAGC GAAGATGATG AACCATCAGA GATACATGAG TCAAAATTTG GCCCAGTAAC ACCAGACAGG GTAAGGCAAA ATCAAAGGGA CTTTGATAGG ACGTATATTT TGTTTGATGA GGTAGATAGT GTGGGAGAAA AACAAAGTAA GAGTCAGGCC AACTATATTG ATGGAACACT AGGCATTGAG AACGAAGGAG AAAATAAGAG TGAACAAGAG AGTGAAGCAG ATGAATTTGT GGATGCACGT AATACAATTG AATCAGAATC GGAGAGTGAT ATTGATGGAG TACCAAAACC GAAACTGGAG CATTACTTTG GGGATATTAG TACTTATTGT TCGGAAGATG CTAACAGTGA CAACGATGAT GGATCAGAAG ATATACAATA TGAAGACATG GCAAATTATC CACGCCATGA AAATTCTGAA GATGAATCTT GTTCAGGTTC TTATTTTTTT GAAGATTCAA ATGTGTCATG TTGCATGTCA GATCCAGTGT GTAAGAAAAC TCTGTCTCAT GATGAGAATT CTCAAAAGCC ATGGGAATTT TTTGCTAGCT GCCCTTCGTT ATTGGCTGAA AAAGCCTTTC CGGATGTAAC AATTTTGCGA GAAGAACCTG TCGCTGCACA TCACTTGTTG GCAGGAGACT GGGCTAATGA AAAGATATCA TCTGAAGAAC CTAGTTTCCC ATACCCGTCT CTGAAAGATG CTATTCCTGC TGAAAAGATC TTGCCAGAAG AACATTCGGT CAACTATCCA TCTCTCGCAG AAGCTATTCC CCGTGAAAAG ATCTCGCCAG GAGAGTCTAT TGCCGAATAT CCATCTTTTG CAGAAATCGT CCTCCAAGAA AAAATCTTGT CGGAAAAGTC TTTGGAAGAA GCTGTGCCTG ACAATATGAC CCCAGCAGGA GAACCTGATG CTACTCATCC ATCATTTCCC GAAGCTGTTC AAGACAAGAA ACTTTCACCA GAAGTTCTTG ATTCGAAATT TTTTTCTGTG CCAGAAGCTG TTTCACAAGA GCCAATCTCA CTTGAAGAGT TTGATGGGAT ATATCCATGT TTGGCTGAAG CTGTTCATGA TGAAAGGTTC TTGACAGAAG AGCCTTCCAC CACATGTTTG TCTTTGACAA AAGCCATCCC TATCGAAAAA GTATTGCCAG AAAAACCTTT GGAATCGTCT CAATATTTGG CAGAATTGCC TAAAGAAGAT ATATTGCAAG AAAAAACTGT TGATTCTACA CGTCCATCTT GTGCCAAAGC TGTTGCAGAA ACAAATTTAT CACAAGAAGT TCTTGATGCC TTAAACTTGT CTGTGACAGA AGCTGTTCCG CAAGAGAAAA TCTCACTTGA AGAATTTGTT GGCATCAATC CGTGTTTGGT AGAAACGGTT CCTGATGAAA GGCTCTTGCC AGAAGAACCT GTCACCACAT ATCTGTCTTT AACAAAAGCT GTGGCCATTG AAAAGGTCTT GTCAGAAGAG ATTTTGGAAA CATATCATTC TTTGGCAGAA TTGCTTGAAG AAGAGATTTC ACAGGAAGAA ACTGATGATG CCACACATAC ATCTGAAGCT GTTAGTGATG AAGGAATCTC CCCAGAAGTT TCTGATTCCA CAAATTTGTC TCTTGAAAAC GCTCTTCCAC AAGAGCAAAT CTCACTTGAA GAATTTGTTG GCATAAATCA GTGTTTGGCA GAAGCGGTTC CTGATGAAAG GTTCTTGCCA GAAAAGCCTT TCGAAACATA TTCTTCTTTG GCAGAATTGC AGGAAGAAAA GATTTTGCAT GAAGAAGCTG ATGATGGTAT GCGCCCATGT CTTTCTGAAG CTTTTACTGA TGAACAAATC TCACCTAAAG TTCTTGATTC CACAAATTCG CCTGTGGCAG AAGCTGTTCC ACATGAACAA ACCACACTTG AAGATTTTGT TGGCAGAGAT CCATGTTTGG TAGAAGCTGT TCATGATAAG AGGGTTTTGC CAGAAGAACA GGTCACCTCA TGTATCTATT TAACAAATGT GGTGCCTATT GAAGAAGTCT TGCCAGAAGA ACCTTTAGAT GTGTGTGCAT CTTTGGGAAA ATTGCCTAAA GATAAGATCT CACAAGAAAA ATCTGATGAG GCTATTCATC CGTCTTGTGC CAAAACTGAA AGTCATGAAA ATTTCTCACT GCAAGTTCTT GATTCATCAA ATTTGTCTGT GGCAGAAGCT ATTCCACATG AACAAACCAC ACTTGACGAA TTTGTTGGCG TAGATCCGTG TTTGGGAGAA GCTGTTCTTG ATGAAAGGGT TTTGCCAGAA GAACTTGACA CCACATGTCT GTCTTTGAAA AAAGCCGCGC CCATCGAAAC AATCTTTCCA GAAGAACCTC CCGAAGTGTA TCCTTCTTTG GAAGAATTGC CAGAAGAAAA GATCTCGCAA GAAAAAGAAG CTACTCATCC ATATTTTTCT GAAGCTGTTT GTGATGAGAA GATCTCACCA CTGGAAGATC CTGGTTCCAC ACATCCATCT TTGGAAGAAT CCGATACGTT CGAGGAGACC TCGCATGAAG AACTTGTTGG AACAAATCCA TTTTTGGAAT TAGCTGTTCC CAACGAAATG GGTTTTCCAG ACGAACCTGG CGTCACATAT CGGTCTGTGG CAGAAGCTGT TTCTAAGGGA AAGAACTTGC CGGAAGAACC CTTACCTACT TATCCGTCTT GGGCAGATGT TGTACCTGAT GAAAAGATCT CTGGAGAAGA ACTTCATTCC ACAAATCCAT CTTCTGCAGA AGCAGTTTTT AAAGAAAAGA TCCCAGGCTC AGAAGCTTCT AGTTCCACAA CAGAAACGGT TCCACACAAC AAAACCTTCC CTGAAGAACC TTTTGCCATG GAAAATTCCT TGAATGAAGC AGTTTTTGAT GAAAAGATCT CAGGCTCAGA AGCTTCTAGT TCCACTACAG AAACTAATCC ACACAACAAA ACCTTCACTG AAGAACCTTT TGCCACGGAA AATTCCCTGA AAGAAGCAGA TTTTGATGAA AAGATCCCTG GTTCAGAAGC TCCTGGTTCT GCAACCGAAA CTGGTCCACA CAACAAATCA TTCCTTGAAG AACCTGTTGC CAGAGATATT TCCTTGAACG AAGCAGTTGT TGATGAAAAG ATCCCAGGCT CAGAAGCTTC TTGTTCCACA AGAGAAACTG TTCCACACAA CGAAACCTTC CCTGGAGAAC CTGTTGCCAC AGATCTTTCC TTGGTCAAAG CTGTTTTTGA TGAAAGGATC CCAGGCTCAG AAGATTCTAG TTCCTCAATA GAAACCGGTC TACACAACAA AACCTTCCCT GGAGAACCTG TTGCCACGGA GCTGTCCTTG ACCGAAGCTG GTTTTGATGA AAAGATCCCC GGCTCAGAAG CTCCTAGTTC CACAACAGAA ACTGGTCCAC ACAACAAAAC CTTCCCTGAA GAACCTGTTA CCAACGAAAA TATTCTGCCA AAAGAACCTG CTGCTGCATA TCTGGCTTTG GCTGAAGGTA TTCCTGACCA AAAAGTATTC TTGGATGATG CCGCACTTTT GTTATTTGCA GAAGCTATTT TCGATCAAAA GTTTTCACCA GAATTTCCAG ATTCCACATA TCCTTCTTTG AAAGAACCAG AAATGCATGT TGCCGCACCA TCTTTAGTAA CAGATCTTCC TGCTAAAAAC ATCAAGGTAA AAGAAGGTGA AGTACATAAT GAACCTTACT CAGCATCTGA CGTTTCTATG AACCAGAAGA GTGGTTTATT GGAACCGGAG TCTACTGAAA GAACAATTCC CTCGAGTGGT GGTACTGACA CGATTTCTCC AGATACTCAG AAATCTCTTC CAAATGGTAC AAGTGTTGAA TCAATCAGTA TATGGAGCAA TGGAGGACTC CTTGGACTTG CGCCATTGAA ACCTCCAGTT TTTGCTGAGC CTAATGCTGG AAGCCAACAT ATACAGAACG AGATCAACGA AGCTAGTGTT CTTTCGACAA GGACGCAGGA ATCATCGAGC CGATCAGTTG AAAATACTGA GAAGAGCTCA CTTCCATTAG TTGTTTCAGA TCCCACGTCT CAACAACACA GCAACATGTC GAGTCTCTCT CCCATGCAGA GCACTGGAAC ATCATTCAGA GTTTTTGGCT TAAGTCATAG ATTACTCATG GCTGGGTTTG GGGGAAACTC TTCTTCATCT TGCAAATTTG AATCCGTACC AAGTAGTAGC TATGTAACCG GAGTAGCAGC TATCGAAGAC AAGACTCAGC AAACTCCTGG TGGCTCAAGC TATGAGGAGC AATGGGATTA TGAATCATCT CTCTTTGGTT CGCCTACTTC ATCACCACCG GTTGAACATA TGAAAATATC ATTCAACCCA ATAGAAGCCT CTCCAGTTCC TAAATTGAAA CTGAGAATCC CATGCCAACC TCGGTACAAT GGTGAAAATG CGGATATGTT CCCTTCGTTT CAGCTGGTTC CAGAGGCTAG CAACTCTGAA GACGACGACG ACAACAGTGA CACCTTTTGT CAGTCATCTC CTTGTGCTTC TGACAATTGT TTGTCAGATT CTGAGCTATG GGAATCTGAT GAAAGCCCTA GAAAATCTGT ATCAAGCTTA AAGCAAGTTG AAGAGAGAAG TAGACATGGC GATATGGGTT CTTTTTCTGG TTCACTTCTT GATCTTCCAT GTTACGACGC TGTAGATCAT CAATCCACAT CTTCAAGACT AGAGCAAGAA CAAGTTCCAG AATACAAACC ATCTGTCTCA GAGATCATCC GTCATTGGCC ACCAAACCAA CCAAAAAGCA GTCCCAGTAA TGAAGCAAAC TTAGACGCAA ACACGGTTCT GAAGAAAACG CAAGATCAAT CTCTCGGATT TGTAGCTACA GATGACGACG GTGGTGATAG TGTTTGTCTT GATGAACATA AAACCAGAAG GATCTAATTG ATTCTTTGTT GTACATTCCT CTCTGTCATT TCAATTTTCA GGTAAAAACA AACACTATTT AT |
| Length | 6092 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 10013233.. 10020773 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G18600.1 |
| Description | SCAR family protein |
| TAIR curator summary | Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments. |
| Alias | [ATSCAR-LIKE][SCARL][WAVE5][WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg322444 | |
| 5.2915 |
Ahg313480 | |
| 5.74456 |
Ahg938693 | Glycosyl transferase family 4 protein |
| 6 |
Ahg479503 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 6.48074 |
Ahg888770 | F-box family protein |
| 6.7082 |
Ahg921494 | Galactose oxidase/kelch repeat superfamily protein |
| 9.05539 |
Ahg495292 | methyl-CPG-binding domain protein 13 |
| 12 |
Ahg944668 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 15 |
Ahg492127 | hydroxyproline-rich glycoprotein family protein |
| 15.4919 |
Ahg917653 | type one serine/threonine protein phosphatase 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|