| Annotation |
|---|
| Description | jgi|Araly1|323531|fgenesh1_pm.C_scaffold_5001075 |
| Sequence |
ATGGGGTCAG AGGGAAGTAT GAAGAACTCG GTTGTGACAC AAGTAAGCAT TGGTGGATTT GGAGAGTCCA CTACTGCTAA ACAACTTACA GATTACCTTG AAGATGAAGT AGGACTTGTT TGGCGATGCA GATTAAAAAC TTCTTGGACT CCTCCTGGCT CTTATCCTAA TTTTGAAATC GCAGACACTT CAAGTATCCC CAAATTTGAT GATTACAAGA AAGTGGAGCC TCATGCGTTT GTCCATTTCG CAGTTCCTGA ATCAGCAGCT CGTGCCATGG ATGCTGCGGG GCAATGCAAC CTCATCCTGG ATGGCCAGCC GTTAAAAGTC AGCTTGGGGC CTAAGAACCC TTACACCCTT AACCAGAGAA GAAGAACGAC CACACCGTAT AAGTTGGCTG GTATTTCACT TGAGATTGGG ACCTTGGTTT CCAGGGATGA GTTTCTTGTT TCTTGGAGAG CTGACGGGGT TGATTTCCTG GTGGATCCTT TTGACAACAC TTGCAAGTTT TGCTTCAGAA AGAGCACTGC GTTTTCTTTC AAGGATGCAG TGATGCATGC TGTGATCAAT TGTGATTATA AGCTGGAGTT ATTGGTGAGA GATATACAAA CAGTCAGGCA GTATAAAAAC TCGCATGGCT ATGTACTTAT TTTGCAGCTG GCTTCGTCAC CCCGTGTCTG GTACAGAACT GCTGATGATG ATATTCACGA TACTATCCCT GTCGATCTCT TGGATGATGA TGACCCTTGG ATCCGTACCA CTGATTTTAC CCAAGTTGGG GCAATTGGTC GATGCCATTC ATATCGAGTG CTCATATCTC CGCGGTATGA AAAGAAACTG ACAACAGCCT TAGATTATCT AAGGATGCGG AGGGTGCAAG AGGAACGTGT GAAGTGGCCT CCCCGGATCC GTAATGAGCC CAGTTTTGGG GAGCTTGTGT CAGATCATTT CTTCTGCATT CATCACAAGG AAGGAATCTC CTTTGAGATC ATGTTCCTAG TAAATTCGGT ATTGCACAGG GGGGTTTTTA ACCAGTTTCA GCTGACTGAG CGTTTCTTTG ATCTTCTCAG AAACCAGCCC AAGGACGTCA ATATAGCTTC TCTCAAGCAT CTCTGTACCT ATAAACGACC AGTTTTTGAT GCGTACAAGA GGTTGAAGCT TGTTCAGGAA TGGATTCTGA AAAATCCAAA GCTTTTAGGG GGTCATGAAC AGTCTGAGGA TATCTCTGAG ATCAGAAGGC TAGTGATTAC CCCAACCAGA GCCTATTGCC TACCCCCAGA AGTTGAGCTC TCCAACAGGG TACTCAGGAA ATACAAAGCT GTTGCTGAAA GATTTTTGCG CGTAACTTTC ATGGACGAAA GTATGCAGAC CATAAATTCG AATGTTCTCT CTTACTTTGT TGCTCCTATT GTGAAGGATC TGACATCAAG CTCTTTCTCC CAGAAGACCT ACGTTTTTAA AAGAGTGAAG AGCATATTAA CCGATGGGTT TAATCTATGT GGTAGAAAAT ACAGTTTTCT AGCATTCTCA GCCAATCAAC TGAGAGACAG CTCTGCATGG TTCTTTGCTG AAGACGGGAA AACACGAGTG TCAGATATAA AAACATGGAT GGGGAAGTTC AAAGACAAGA ATGTGGCAAA ATGTGCTGCT AGGATGGGCC TGTGCTTCTC CTCCACATAT GCCACTGTAG ATGTCATGCC TCACGAGGTT GACACCGAGC TTCCAGACAT TGAGAGAAAT GGGTATGTTT TCTCTGATGG AATTGGTACA ATCACACCTG ACCTCGCTGA CGAAGTAATG GAGAAACTTA AGTTGGATCT CCACTGTACC CCTTGTGCTT ATCAGATACG TTACGCAGGT TTCAAAGGAG TTGTTGCTCG TTGGCCATCA AAAGGTGATG GAATCAGGCT AGCCCTTCGA GATAGTATGA AGAAGTTCAA TTCCAAACAT ACCATCTTGG AGATCTGTTC CTGGACGAGG TTTCAACCTG GATTCTTAAA TCGGCAGATA ATTACCCTCC TTTCTGTACT AGGTGTGCCG GATGAAATAT TTTGGGATAT GCAGGAATCC ATGCTCTATA AACTGAACCG CATCCTTGAT GATACAGATG TGGCATTTGA AGTTCTCACA GCATCATGTG CTGAACAGGG AAACACTGCA GCTATCATGC TAAGTGCAGG TTTCAAACCA AAAACTGAGC CACATCTACG CGGAATGTTG TCTTCAGTCA GAATTGCGCA ACTCTGGGGT CTTAGAGAAA AATCTCGTAT TTTTGTTACT TCAGGAAGGT GGCTAATGGG TTGCCTAGAC GAAGCAGGGA TACTTGAACA TGGCCAATGC TTTATCCAAG TCTCTAAACC GTCTATAGAA AATTGTTTCT CCAAACATGG GTCTCGTTTT AAGGAGACAA AGACAGATCT GGAAGTAGTT AAAGGCTATG TAGCTATTGC TAAGAATCCT TGTCTTCACC CAGGGGATGT AAGGATTTTA GAAGCTGTTG ATGTACCCCA GCTGCATCAC ATGTATGACT GCCTTATTTT CCCCAAGAAA GGTGATAGGC CCCATACAAA CGAAGCTTCT GGTAGTGACC TTGACGGGGA CCTGTACTTT GTGGCTTGGG ATCAGAAACT CATCCCTCCC AACAAAAAAA GCTATCCGGC CATGCATTAT GATGCCGCTG AAGAGAAGAG TTTAGGCCGT GCTGTCAACC ACCAGGATAT AATTGATTTC TTTGCAAGAA ACATGGCGAA TGAGCATTTG GGCACAATTT GTAATGCACA TGTCGTTCAT GCTGATAGAA GTGACTATGG AGCCATGGAC GAAGAATGTT TGCTACTGGC AGAACTAGCT GCCACTGCAG TTGATTTCCC AAAGACAGGG AAAATTGTGT CAATGCCCTT CCACCTAAAA CCAAAACTCT ACCCAGATTT CATGGGAAAA GAAGACTACC AAACTTACAA GTCGAACAAA ATCTTGGGCC GGCTTTACAG GCGGGTAAAA GAAGTTTACG ATGAAGATGC AGAAGCTTCC TCAGAAGAAA GCTCAGACCC AAGTGACATC CCTTATGACA TTGATCTTGA AATACCAGGA TTTGAAGATT TGATCCCCGA GGCATGGGGG CACAAATGTT TTTACGACAG GCAGCTCATT GGTCTTCTCG GGCAATACAA GGTCCAGAAA GAGGAGGAGA TTGTGACGGG TCATATCTGG TCTATGCCTA AATACACAAG TAAGAAACAA GGCGAACTGA AAGAAAGACT GAAGCATTCT TACAATTCCC TGAAAAAAGA GTTCAGAAAA GTATTTGAGG AAACAATCCT GGACCACGAA GAGCTCAGCG AAGAGGAAAA GAACATTTTG TATGAGAAGA AGGCTTCAGC TTGGTATCAT GTCACTTACC ATCCCAAGTG GGTGAAGAAG TCTTTAGAGC TGCAAGATCC AGATGAGCCG TCTAGTCATG CGGTGATGCT GAGTTTTGCT TGGATTGCAG CTGATTATCT TGCAAGAATC AAAATCCGGT CAGGGGAAAT GGGAAATATC GACTCAGCCA AGCCTGTTGA TTCTTTGGCC AAGTTTCTTG CTCAACGTCT CTAA |
| Length | 3594 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 13790615.. 13794620 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G49500.1 |
| Description | RNA-dependent RNA polymerase 6 |
| TAIR curator summary | Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance. |
| Alias | [RDR6][SDE1][SGS2][RNA-dependent RNA polymerase 6][SILENCING DEFECTIVE 1][SUPPRESSOR OF GENE SILENCING 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.8995 |
Ahg473189 | Magnesium transporter CorA-like family protein |
| 11.6189 |
Ahg488829 | Telomerase activating protein Est1 |
| 17.2337 |
Ahg484052 | quinolinate phoshoribosyltransferase |
| 18.3848 |
Ahg478716 | proteasome activating protein 200 |
| 21.2132 |
Ahg490595 | Patched family protein |
| 23.8747 |
Ahg490290 | ETO1-like 1 |
| 24.98 |
Ahg492801 | tripeptidyl peptidase ii |
| 26.2298 |
Ahg903021 | auxin transport protein (BIG) |
| 26.2679 |
Ahg488220 | |
| 27.1109 |
Ahg916997 | YELLOW STRIPE like 3 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|