| Annotation |
|---|
| Description | jgi|Araly1|326097|fgenesh1_pm.C_scaffold_6001317 |
| Sequence |
ATGATAAGTT GTGGAGATGT TTACAAGGTA ATCGAAGCAA TGGTTCCACT ATATGTAGCC TTAATCTTAG GCTATGGTTC TGTGAAATGG TGGAACATCT TCACTCGTGA TCAATGCGAT GCTATAAACC GGCTCGTTTG CTATTTCACC CTTCCGCTCT TCACAATCGA GTTCACGGCC CATGTCGACC CATTCAACAT GAATTACCGG TTCATCGCTG CCGATGTCCT CTCTAAGGTC ATCATAGTCA CGGTCTTAGC GTTTTGGGCC AAATATAGCA ACAAAGGAAG CTATTGTTGG TCCATTACTA GTTTCTCTCT ATGCACTCTT ACCAACTCTC TGGTCGTTGG TGTGCCATTG GCTAAGGCAA TGTACGGACA ACAGGCTGTC GATCTCGTGG TTCAATCCTC GGTATTTCAA GCCATCGTGT GGCTCACACT CTTGTTGTTT GTCTTAGAGC TTAGAAAAGC CGGATCTAGT AGTAATTATA GCAGCGACGT AAAGGTAGAC AGCATCAATA TCGAAAACGG AAAAAGAGAA ATTGTGGTTG TGGGAGAGGA GAAGTCGTTC CTTGAGGTCA TGTCCCTCGT TTGGTTGAAG CTTGCAACAA ATCCGAATTG CTATTCTTGC ATCCTTGGGA TCGCATGGGC TCTTATTTCT AACAGATGGC ATCTGGAGAT GCCGGGCATA TTAGAGGGAT CGATTCTTAT AATGTCAAAA GCAGGAACAG GAACCGCCAT GTTCAATATG GGGATATTCA TGGCACTTCA AGAGAAGTTG ATAGTATGTG GAACAAGCTT GACTGTGATG GGAATGGTCT TGAAGTTTAT TGCCGGACCT GCCGCCATGG CCATCGGTTC TATCGCCCTT GGCCTCCACG GCAATGTCCT CCGCGTTGCC ATCATTCAGG CTGCTTTGCC ACAATCGATC ACTTCGTTCA TTTTTGCTAA GGAATATGGA TTACATGCAG ATGTTCTAAG CACAGCGGTG ATATTCGGGA TGTTGGTTTC TCTGCCTGTG CTCGTCGCTT ACTACGCAGC TCTGGAGTTT ATTCATTGA |
| Length | 1059 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 6440247.. 6441835 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G16530.1 |
| Description | Auxin efflux carrier family protein |
| TAIR curator summary | Encodes PIN5, an atypical member of the PIN family. PIN5 is a functional auxin transporter that is required for auxin-mediated development. PIN5 does not have a direct role in cell-to-cell transport but regulates intracellular auxin homeostasis and metabolism. PIN5 localizes, unlike other characterized plasma membrane PIN proteins, to endoplasmic reticulum (ER), presumably mediating auxin flow from the cytosol to the lumen of the ER. |
| Alias | [PIN5][PIN-FORMED 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.16441 |
Ahg492401 | phosphoglucan, water dikinase |
| 8.7178 |
Ahg479088 | HPT phosphotransmitter 4 |
| 11.7473 |
Ahg481085 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| 12.7671 |
Ahg932721 | |
| 15.9687 |
Ahg928996 | Homeodomain-like superfamily protein |
| 17.4929 |
Ahg490488 | TRAF-like family protein |
| 18.9737 |
Ahg348938 | RING/U-box superfamily protein |
| 20.199 |
Ahg484766 | chromatin remodeling 38 |
| 20.347 |
Ahg475341 | thioredoxin H-type 7 |
| 20.4939 |
Ahg496573 | amino acid permease 4 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|