| Annotation |
|---|
| Description | jgi|Araly1|484766|fgenesh2_kg.5__758__AT3G42670.1 |
| Sequence |
ATGAAGAGAA AGCATTACTT TGAGTTTAAT CATCCATTTA ATCCATGTCC TTTCGAGGTG TTCTGCTGGG GGACATGGAA GGCCGTGGAG TACTTAAGAA TCGAGAATGG AACGATGACG ATGCGTCTCT TGGAAAATGG ACAAGTATTG GATGATATAA GACCATTTCA GAGGCTTCGT CTTAGATCAA GAAAGGCGAC TTTGATCGAC TGTACTTCTT TTTTAAGACC CGGTATCGAT GTTTGCGTTC TCTATCAGAA AGATGAAGAG ACTCCAGAAC CGGTTTGGGT GGATGCAAGG ATATTATCTA TAGAGAGGAA GCCTCATGAA TCTGAATGCT TGTGTACGTT CCATGTCATT GTTTATATAG ACCAAGGCTG CATCGGTTTG GAGAAGCATA GAATGAATAA AGTTCCGGTA CTCGTGGGAC TCAACCAAAT CGCCATTCTC CAAAAGTTTT GCAAGGAACA AAGCTTGGAC CGCTACTACA GATGGAGATA CTCTGAGGAC TGCTCTTCGC TGGTGAAAAC AAGACTAAAC CTGGGGAAGT TCTTGCCTGA TCTTACATGG TTGCTTGTTA CATCAGTTTT GAAAAACATT GTGTTTCAGA TCAGAACAGT TCACGAGAAG ATGGTTTATC AGATTGTGAC TGATGAAGAT TGCGAAGGCT CTAGTAGCTC TTTGAGTGCA ATGAACATCA CGGTCGAAGA CGGTGTTTTC ATGTCTAAGG TGGTTTTGTT CAATCCAGCT GAGGATACTT ATGAAGATAG TGATGTAAAG GAGGAGATTG AAGAGGAGGT AATGGAGCTG CGTCGGTCCA AGAGAAGAAG CGGGCGACCT GAGAGATACG GGGACTCTGA GATTCAGCCA GATTCAAAGG ATGGATGGGT AAGGATGATG CCATATAGGT ACAGTACATG GACTGTTTCA AGTGATGACG ATGACGAAGA AAATTGTGAT GATGATAGAG ATACCGATGA CGATTTATAC TTACCGTTAT CGCATTTACT TGGAAGAAAA GGAAGCACAA AGGGATTAAG TAAGGATAAG CAAAGAGAGA TTGTTTTGGT AGACAAAACT GAAAGGAAGA AGAGAAAGAA AACAGAGGGA TTTGGTCGAA ATTGTGAGCT TTCGGTTATT CCTTTCACTC CTGTCTTTGA ACCTATACCG TTGGAACAGT TTGGTCTCAA TGCAAATAGT TTGTGTGGTG GTTTCTCTGG AAGTCATTTG ATGGATGAGA TCGATAAGTA TCGTAGTAAA GCAGCGAAAT ACGGGAAGAA GAAGAAGTTA GAAATGGAAG AGATGGAATC TGATCTAGGT TGGAATGGAC CCATTGGCAA TGTGGTTCAT AAAAGAAATG GACCGCATTC CCGAATAAGG TCCGTTTCTA GGGAAACCGG AGTTTCTGAG GAACCGCAGA TTTATAAGAA GAGAACGTTG AGCGCAGGCG CGTATAACAA GCTGATCGAC TCGTACATGA GTAGAATTGA TTCTACAATT GCAGCCAAAG ATGAAGCAAC CAATGTTGTT GAGCAGTGGG AGGGGATAAA GAACACTGCA ACCTTTTCTA TAGAAGCCGA AGAAAGGTTG AGTGACGAGG ATGACGATGA CGGAGAGACG TCAGAGAACG AGATGCTATG GAGGGAAATG GAACTATGTT TGGCTTCTTC TTACATTCTT GATGACAATG AGGTGAGAGT GGATAACGAG GCGTTCCATA AAGCAACCGG TGATTGTGAA CATGATTATG AATTGAATGA AGAAATCGGA ATGTGTTGCA GATTGTGTAG TCATGTAGGA TCTGAGATAA AACATGTCTC TGCACCTTTT GCGCAGCACA AGAAATGGAC CACGGAGACT AAGCAAATCA ACGAAGATGA CATTAATACT ACTAAAGTGA ACCAAGATGG AGTTGAGAAC CATACTTTCA CTATACCAGT TGCTTCCTCC GATATGCCCT CTGCTGAAGA AAGTGACAAT GTTTGGTCTC TAATACCTCA GCTTAAGAGA AAACTGCATT TGCACCAGAA AAAAGCTTTT GAGTTTCTCT GGAAGAACTT AGCCGGGTCA GTGATTCCCG CGATGATGGA TCCGAGTTCA GAGAAGATAG GTGGGTGCGT GGTTTCTCAT ACTCCCGGAG CAGGCAAAAC ATTTCTGATC ATAGCTTTTC TCGCGAGCTA CTTGAAGATA TTTCCGGGTA AAAGGCCATT GGTTCTTGCT CCAAAAACAA CGTTGTACAC ATGGTATAAG GAGTTCATCA AATGGGAGAT TCCGGTCCCT GTTCACTTGC TCCATGGTCG TAGAACCTAC TGTGTGTCCA AAGAGAACAC CATTCAGTTC AAGGGAATTC CAAAACCGAG CCAAGATGTT ATGCATGTTC TTGACTGTTT AGACAAAATC CAGAAATGGC ATGCACAGCC GAGTGTTCTT GTGATGGGTT ACACATCGTT CCTAACATTG ATGAGGGAAG ATTCAAAGTT TGCTCATAGA AAATACATGG CCAAAGTACT GAGAGAGTCT CCTGGATTAC TAGTTTTAGA CGAGGGACAT AACCCGAGGA GTACCAAATC GAGATTACGA AAGGCCTTGA TGAAAGTTGA TACTGATTTG AGGATTCTGC TTTCGGGTAC ATTGTTTCAG AACAACTTCT GTGAGTACTT CAACACTTTG TGCTTGGCTA GACCCAAGTT TGTTCATGAG GTTCTTGTGG AGTTGGACCA GAAGTTCCAG ACCAACCAAG CTGTGGAAAA GGCGCCTCAC TTGCTTGAAA ATAGAGCTCG GAAATTCTTC CTCGACATTA TTGCCAAGAA GATTGACACA AAAGTGGGCG ATGAGCGCTT GCAGGGTCTC AACATGTTGA GGAATATGAC CAGTGGTTTC ATCGATAACT ATGAAGGGAG CGGAAGCGGA AGTGGTGATG TTCTCCCAGG TTTGCAGATT TACACATTGT TGATGAATTC AACTGATGTA CAGCACAAGA GTCTTACCAA ACTTCAGAAT ATAATGTCGA CTTACCATGG ATATCCACTC GAGCTTGAGT TACTCATAAC GTTAGCAGCT ATCCATCCTT GGTTGGTCAA AACCACTACA TGTTGCACCA AATTCTTCAA TCCTGAGGAG CTTTTCGAGA TTGAGAAGCT CAAGCATGAT GCAAAGAAAG GATCAAAAGT CATGTTTGTG CTTAACCTAG TGTTCCGGGT GGTCAAGAGG GAGAAAATCC TCATCTTTTG CCACAACATT GCGCCGATCC GCCTGTTTCT TGAGCTGTTT GAGAATGTTT TCAGGTGGCA GAGAGGCCGA GAGCTCCTGA CCTTGACAGG GGATCTCGAG CTGTTTGAGA GAGGCAGAGT GATAGACAAA TTTGAAGAAC CAGGAGGCCA GTCCCGTGTT CTGCTGGCTT CGATCACAGC CTGTGCAGAA GGCATCAGTC TAACCGCTGC TTCCCGGGTG ATCATGCTTG ATTCGGAGTG GAATCCTTCT AAGACTAAGC AAGCAATCGC ACGTGCGTTC AGACCAGGAC AGCAGAAAGT GGTGTACGTT TACCAGCTCT TGTCCAGAGG AACACTTGAG GAAGACAAAT ACAGGAGGAC GACCTGGAAA GAGTGGGTGT CAAGTATGAT TTTCAGCGAA GAATTTGTGG AGGACCCATC ACAGTGGCAA GCTGAGAAGA TCGAGGACGA TGTTCTTAGA GAAATCGTGG AGGAAGACAA AGTCAAATCC TTCCATATGA TCATGAAGAA CGAGAAAGCT TCAACAGGTG GCTGATTGCT GAAGTTTTAC AGTTCAAGTT TCTGTTTCAC CATGCCTTTG ATGATGATTC TTTAACAGCT TGTTGTATTG TAATATAAAC TAATCCGGTA TCACAAGTTT GTG |
| Length | 3873 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 9053357.. 9057620 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G42670.1 |
| Description | chromatin remodeling 38 |
| TAIR curator summary | Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced. |
| Alias | [CHR38][CLSY][CLSY1][chromatin remodeling 38][CLASSY1][CLASSY 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.53939 |
Ahg477227 | Spc97 / Spc98 family of spindle pole body (SBP) component |
| 9.79796 |
Ahg910238 | callose synthase 1 |
| 12.6491 |
Ahg932396 | Leucine-rich repeat protein kinase family protein |
| 20.199 |
Ahg326097 | Auxin efflux carrier family protein |
| 20.7846 |
Ahg489556 | Protein of unknown function (DUF1624) |
| 22.4499 |
Ahg494156 | alpha/beta-Hydrolases superfamily protein |
| 22.6274 |
Ahg470934 | MALE GAMETOPHYTE DEFECTIVE 2 |
| 22.9129 |
Ahg889064 | Leucine-rich repeat protein kinase family protein |
| 26.2679 |
Ahg495982 | RAN binding protein 1 |
| 28.2489 |
Ahg491201 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|