| Annotation |
|---|
| Description | jgi|Araly1|333551|fgenesh1_pg.C_scaffold_1000116 |
| Sequence |
ATGGAGCCTA GGGAAGACAT AATAAAGCCT TCTTATTGGC TAGATGCTTG CGAGGACATC TCTTGTGATC TTATTGATGA TCTCGTGTCT GATTTTGATC CTTCCTCTGT TGCTGTCAAT GAATCCACTG ATGACAACGG CGTCATCAAT GATTTTTTCG GTGGGATTGA TCACATTTTA GATAGTATCA AGAACGGTGG AGGCTTACCA AACAATGGCG TTTCTGATAC CAACGAGGTT AGTGTAACTC CTCAGGTTAT TGCTAAGGAG GTTACAGTCT CGGTGAAGGA GAATGGGTTG CAAAAGAATG GCGGTAAGAG AGACGAATTG TCGAAAGAGG AAGGAGAGAA GGATAGGAAG AGAGCTAGGG TTTGTAGTTA TCAGAGTGAA AGGAGTAACC TTTCAGGTAG AGGACAGGTT AATTCTAGGG AGAGAGATAG GTTTATGAAT AGGAAACGCC CTCGTAATTG GGACGAGGCG GGTAACAATA AGAAAAGGGA ATGTTACAAT TACAGAAGAG ATGGTAGAGA TAGAGAAGGT AGGGGTTACT GGGAGAGGGA TAAAGTTGGT TCCAATGAGT TGGTCTATCG GTCAGGGACT TGGGAAGCTG ATCACGAAAG AGATGTTAAG AAAGAGAGTG GTCGAAATCG CGAATGTGAT GTGAAGGTTG AGGAGAATAA GAGTAAGCCT GAAGAACGTA AAGAGAAGGT TGTGGAAGAG CAAGCAAGGC GATACCAGTT GGATGTGCTT GAACAAGCTA AAGCGAAAAA CACGATTGCT TTCCTTGAGA CCGGTGCTGG AAAGACACTT ATCGCTATTC TTCTTATTAA AAGTGTTCAT AAGGATTTGA TGAGCCAGAA CAGAAAAATG CTCTCGGTGT TCTTGGTTCC TAAAGTGCCT TTGGTTTATC AGCAAGCAGA AGTGATCCGT AATCAAACTT GTTTTCAAGT TGGGCATTAC TGTGGTGAGA TGGGACAGGA CTTTTGGGAT GCTCGAAGAT GGCAACGAGA GTTTGAGTCT AAGCAGGTTT TAGTAATGAC AGCACAAATT CTGTTGAATA TACTGAGACA CAGTATCATT AGAATGGAAA CAATTGATCT TCTTATTCTC GATGAATGTC ACCACGCTGT CAAGAAACAT CCATACTCTT TAGTGATGTC AGAGTTTTAC CATACAACTC CTAAAGATAA AAGACCTGCC ATCTTTGGAA TGACTGCTTC GCCCGTTAAT CTAAAGGGTG TTTCAAGCCA AGTAGATTGT GCGATAAAAA TACGCAACCT TGAGACCAAG TTGGATTCTA CGGTTTGTAC AATAAAAGAT CGAAAAGAAT TAGAGAAGCA TGTGCCTATG CCTTCAGAGA TAGTCGTCGA GTATGACAAA GCTGCTACTA TGTGGTCTCT TCATGAGACA ATAAAGCAAA TGATTGTAGC TGTTGAAGAA GCGGCACAAG CAAGTTCAAG GAAAAGCAAG TGGCAATTTA TGGGGGCTAG GGATGCTGGA GCAAAGGATG AACTGAGACA GGTTTATGGC GTCTCTGAAA GAACGGAGAG CGATGGAGCC GCCAATTTGA TTCATAAACT TAGAGCTATT AATTATACTC TTGCTGAATT GGGTCAATGG TGTGCTTACA AGGTGGGGCA ATCGTTTTTG ACTGCTTTGC AAAGTGATGA GAGGGTGAAT TTCCAAGTCG ACGTGAAGTT TCAAGAATCA TACCTCAGTG AGGTGGTGTC ACTATTGCAA TGTGAACTTC TGGAAGGCGC TGCTGCTGAA AAGGTCGCAG CGGAATTTAG CAAACCAGAA AATGGTAATG CAAATGACGA GATGGAGGAG GGAGAGCTCC CTGATGATCA TGTGGTCTCG GGAGGGGAAC ACGTTGATGA AGTAATAGGT GCCGCAGTGG CTGATGGGAA AGTTACTCCA AAAGTTCAAT CATTGATCAA ACTACTCCTC AAGTATCAGC ACACATCTGA TTTTCGAGCT ATTGTTTTTG TTGAGAGGGT GGTTGCTGCT TTGGTTCTTC CTAAGGTTTT TGCAGAGCTG CCTTCGCTTG GTTTTATACG GTGTGCCAGC ATGATTGGAC ACAATAACAG CCAGGAAATG AAATCTTCTC AAATGCAAGA TACAATTTCC AAATTCCGAG ATGGGCATGT GACACTGCTT GTTGCCACAA GCGTTGCTGA GGAAGGACTT GATATTAGGC AATGTAACGT TGTTATGCGC TTCGACCTTG CAAAGACGGT GCTGGCATAT ATTCAGTCTC GTGGTCGGGC AAGAAAGCCT GGATCAGACT ACATACTCAT GGTTGAGAGG GGAAATGTAT CTCACGCAGC GTTCCTTAGG AATGCTCGGA ACAGTGAGGA GACGCTTCGA AAAGAAGCAA TTGAAAGGAC TGATCTTAGT CATCTCAAAG ATACATCGAG ATTAATCTCC ATTGATGCTG TGCCGGGTAC AATTTATAAG GTGGAGGCAA CTGGTGCCAT GGTTAGCTTG AATTCGGCGG TTGGTCTTGT ACATTTCTAC TGCTCTCAGC TTCCCGGTGA CAGGTATGCA ATCCTTCGTC CTGAGTTTAG CATGGAGAAG CATGAAAAGC CTGGGGGCCA CACAGAGTAT TCATGTAGGC TTCAGCTTCC TTGCAATGCA CCTTTTGAAA TACTCGAGGG TCCTGTTTGC AGTTCAATGC GTCTTGCACA ACAGGCTGTA TGTCTAGCTG CTTGCAAGAA ACTGCATGAG ATGGGTGCAT TTACCGATAT GCTATTACCG GACAAGGGAA GTGGTCAAGA CGCTGAGAAG GTTGACCAAG ATGATGAAGG TGAGCCTGTT CCTGGAACTG CTAGACATAG AGAGTTCTAT CCTGAAGGTG TGGCGGATGT ACTGAAGGGA GAATGGATTC TATCTGGAAA GGAAATATGT GAGAGCTCAA AGCTATTCCA TTTATACATG TATAGTGTCA GATGTGTAGA TTTAGGCTCT TCAAAAGATC CATTCCTAAC CGAAGTTTCA GAGTTCGCGA TTCTTTTTGG CAATGAGCTG GATGCAGAGG TATTATCGAT GTCTATGGAT CTTTATGTTG CTCGGGCCAT GATCACTAAA GCATCTCTTG CTTTCAAGGG ATCACTTGAT ATTACAGAAA ACCAGCTATC ATCTCTAAAA AAGTTTCATG TGAGATTAAT GAGTATCGTG TTGGATGTTG ATGTTGAACC CTCCACGACA CCATGGGATC CTGCAAAGGC CTACTTGTTT GTCCCTGTTT CTGACAATAC GTCAATTGAA CCCATAAAAG GGATCAACTG GGAATTGGTT GAAAAGATTA CGAAAACCAC TGCGTGGGAC AACCCTCTTC AGAGAGCTCG TCCCGATGTA TATCTCGGGA CTAATGAGAG AACTCTTGGT GGGGACAGAA GGGAATATGG GTTTGGTAAA CTTCGTCACA ACATTGTCTT TGGGCAGAAA TCTCACCCAA CTTATGGTAT TAGAGGAGCT GTTGCATCTT TCGATGTTGT GAGAGCTTCT GGATTGTTAC CTGTAAGAGA TGCGTTTGAG AAGGAAGTAG AAGAGGATCT ATCAAAAGGA AAATTGATGA TGGCTGATGG GTGCATGGTT GCAGAAGATC TTGTTGGGAA AATAGTGACA GCCGCACATT CCGGGAAGCG GTTTTACGTA GATTCAATTT GTTATGATAT GAGTGCAGAA ACATCATTCC CAAGGAAAGA GGGATATCTT GGTCCCCTAG AGTACAACAC GTATGCTGAC TATTACAAGC AAAAAGAAGC AAGCACTCTA CTAATACTTT ATTGCTACCA CGAGGACTTC CATGGCCTCA ATCCACCTCC GGTGTTGTGC AAGAATGAGA AGCAAAGCCT GTCTATGTAT TGTGAGATAT CTACTTCTAT GACTAGGATA TATGTACAAG ACCGGCTTTT CTTCTTCTTC TTGCACAACC TGAGGTATGG AGTTGATTTG AACTGTAAGC AACAACCTTT GATCAAAGGA CGGGGTGTTT CGTATTGCAA GAACCTTCTT TCTCCTCGGT TTGAACAGTC AGGTGAATCT GAGACAATCC TTGATAAAAC ATATTACGTG TTTCTTCCAC CTGAACTATG CGTTGTCCAT CCACTTTCGG GTTCACTTGT CCGAGGTGCT CAGAGGTTAC CCTCTATAAT GAGAAGAGTT GAGAGCACGT TGCTCGCTGT TCAACTCAAA AATTTGATTA GTTATCCTAT TCCCACATCT AAGATTCTGG AAGCCTTGAC TGCCGCCTCG TGCCAGGAAA CGTTCTGCTA CGAGAGAGCT GAGCTTTTAG GAGATGCTTA TCTAAAATGG GTTGTTAGTC GTTATCTGTT TCTGAAGTAT CCGCAAAAGC ACGAGGGTCA GCTTACAAGG ATGAGACAAC AAATGGTTAG TAACATGGTT CTTTATCAGT TTGCTCTGGT TAAAGGGCTT CAGTCATATA TCCAGGCGGA TCGTTTCGCC CCGTCTAGGT GGTCTGCTCC TGGAGTGCCT CCGGTTTTCG ACGAGGACAC AAAAGATGGA GGATCTTCGT TTTTCGATGA AGAGCAAAAA CCTGTTTCCG AGGAAAACAG CGATGTGTTT GAAGATGGGG AGATGGAAGA TGGTGAACTA GAGGGTGATT TGAGTTCTTA CCGAGTTTTA TCTAGCAAAA CGTTAGCTGA TGTTGTTGAA GCTTTGATTG GTGTTTATTA CGTCGAAGGG GGTAAGATTG CAGCAAATCA TTTGATGAAA TGGATTGGGA TTCATGTGGA GGATGATCCT GATGAAGTCG AAGGAACGGT GAAAAATGTA AATGTTCCAG AGAGTGTGCT CAAGAGTATT GACTTTGTTG GTCTTGAGAG AGCTCTTAAA TTTGAGTTTA AAGAGAAAGG TCTTCTTGTT GAAGCTATAA CACATGCTTC AAGACCATCT TCAGGTGTTT CGTGTTACCA AAGATTGGAA TTTGTTGGTG ATGCGGTCTT GGATCATCTT ATCACAAGAC ACCTGTTTTT CACATACACA AGCCTTCCTC CTGGTCGGTT AACTGATCTT CGAGCTGCAG CGGTTAACAA CGAGAATTTT GCTCGTGTTG CGGTTAAACA TAAACTCCAC TTATACCTTC GTCACGGTTC TAGTGCCCTC GAAAAACAGA TTCGGGAATT TGTGAAGGAA GTTCAAACCG AGTCGTCAAA ACCGGGGTTT AACTCTTTTG GTTTGGGAGA CTGTAAAGCA CCAAAAGTTC TTGGAGATAT TGTTGAATCT ATTGCAGGTG CTATTTTTCT TGATAGTGGA AAAGATACAA CTGCTGCTTG GAAGGTTTTT CAACCTTTGC TTCAGCCCAT GGTGACACCA GAGACACTTC CAATGCATCC GGTTCGAGAG CTACAAGAGC GTTGCCAGCA ACAAGCAGAA GGATTAGAAT ACAAAGCGAG TAGAAGTGGT AACACAGCGA CTGTGGAAGT TTTCATCGAT GGTGTTCAAG TTGGAGTGGC ACAAAACCCA CAGAAGAAAA TGGCTCAAAA GCTAGCGGCT AGGAACGCGC TCGCAGCTTT GAAAGAGAAA GAAATAGCAG AATCAAAGGA GAAGCGCGTG AACGGGAATG CTGTAGAGAA TCAAGACGAT GAGAATGGGA ACGCGAACAA GAAGAATGGA AATCAGACGT TCACGAGACA AACGTTGAAT GATATTTGCT TGAGGAAGAA TTGGCCAATG CCTTCTTACA GATGTGTGAA AGAAGGAGGA CCGGCTCACG CAAAGAGGTT TACGTTTGGG GTTAGAGTTA ATACGAGCGA TAGAGGATGG ACCGATGAGT GTATTGGCGA GCCAATGCCG AGTGTTAAGA AAGCCAAGGA TTCAGCTGCA GTTCTTCTAC TTCAGCTTTT AAATAAAACC TATTCTTGA |
| Length | 5889 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 473921.. 481407 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G01040.2 |
| Description | dicer-like 1 |
| TAIR curator summary | Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. |
| Alias | [ASU1][ATDCL1][CAF][DCL1][EMB60][EMB76][SIN1][SUS1][ABNORMAL SUSPENSOR 1][DICER-LIKE 1][CARPEL FACTORY][dicer-like 1][EMBRYO DEFECTIVE 60][EMBRYO DEFECTIVE 76][SHORT INTEGUMENTS 1][SUSPENSOR 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.245 |
Ahg333056 | Chaperone DnaJ-domain superfamily protein |
| 12.6491 |
Ahg354992 | Pentatricopeptide repeat (PPR) superfamily protein |
| 14.5602 |
Ahg486382 | multidrug resistance-associated protein 14 |
| 15.8745 |
Ahg496304 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 16.7033 |
Ahg952033 | Cyclase family protein |
| 16.7929 |
Ahg904152 | RNA binding (RRM/RBD/RNP motifs) family protein |
| 16.9115 |
Ahg487451 | |
| 16.9115 |
Ahg942029 | Protein of unknown function (DUF1162) |
| 17.6635 |
Ahg477717 | AT hook motif DNA-binding family protein |
| 20.199 |
Ahg930269 | Protein kinase superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|