| Annotation |
|---|
| Description | jgi|Araly1|354992|fgenesh1_pg.C_scaffold_7002165 |
| Sequence |
ATGAAATTTA CTGTCTTGCC ACTTTCTTCT TGTTCCAGCG ATTTCTCTCT CCACTCCAAA TTTCCAGATA GTTCTCGTCA CTGTTTGGAT TTGGCTTCAG CTTCTTCATT GCTAAATTCT AGACTGATGC TTAGGAAATC GTTGCGTCGA TTCGATCTCA GTAATGTAGA AACCCTAATT CCACGGCTCT TGTGCAGTCA CGCCTCAAAA CCGGCTCTGT TCTGTACTAG TATTGAACCT GCTAGATTAA GCTGGGAAGT TTCTTCTCAA GTGATTCTCA AGAAAAAGCT CGAAACAGCT CTCAAGGATC ACCGTGTAGA TGATGCTTGG GACGTGTTTA AAGATTTCAA ACGGCTCTAT GGTTTTCCCG AAAGTGTAAT CATGAACAGG TTTGTTACTG TGTTGTCCTA CTCGTCTGAT TCTGGTTGGC TTTGCAAGGC TAGTGATCTG ACTCGTTTAG CTTTGAAGCA GAACCCAGGT ATGTTAAGTG GCGATGTTTT AACTAAGTTG TCGTTGTCTT TAGCGAGAGC TCAGATGGTT GAATCTGCTT GTAGTATACT TCGAATAATG CTGGAGAAGG ATTTTGTTCT GACATCAGAT GTATTGAGGC TTGTAGTGAT GCATTTGGTG AAAACAGAGG TTGGGACTTG CTTAGCTTCG AATTATTTGG TTCAGGTTTG TGATCGTTTT GTGGAGTTAA ATGTGGGGAA AAGAAATAGT AGCTCCGGGA ATGTTGTGAA GCCTGATACG GTCGTGTTTA ATCTTGTACT TGGTTCTTGT GTGAGATTTG GTTTCTCTCT CAAAGGCCAA GAACTTATCG AGCTAATGGC AAAAGTTGAT GTCGTTGCGG ATGCATACTC GATTGTGATC ATGTCTTGCA TTTATGAAAT GAATGGTATG CGGGATGAGT TGAGGAAGTT CAAGGAGCAT ATTGGTCAGG TACCGCCTCA ACTTCTTTGT CACTATCGGC ATTTGTTTGA TAATTTGTTA AGCCTTGAGT TCAAATTTGA TGATATCCGT TCTGCGGGTC GGCTTGTCTT AGATATGTGC AAGAGTAAGG ACTTGGTTTC AGTTCAGAAT CTTGGATTTG ATTCTGAAAA GCCTCGGGTT TTACCTGTTG GGTCTCACCA TATCAGATCC GGGTTAAAGA TTCATATTTC ACCTAAGCTT TTGCAGAGAG ATTCATCTCT TGGAGTGGAT ACTGAAGCAA CATTTGTCAA TTTTTCCAAT TCCAAGCTTG GCATCACAAA CAAGACTCTT GCGAAGTTAG TATATGGGCA CAAGAGACAT GATATTCTCC CTGAGCTATC AAAGCTTCTG TTTTCGCTGG GTGGATCCAG GTTATGTGCT GATGTCATTG ATGCTTGTGT CGCTATTGGT TGGTTAGAAG CTGCTCATGA TATTCTTGAC GTCATGGTTT CTGCTGGTCA TCCCATGGAA TTGGCCACGT ATAGAAAAGT CTTGTCGGGT TATTACAAGA GCAATATGTT GAGAAATGCA GAAGTTCTTC TGAAACAAAT GACGAAAGCC GGTCTAATTA CAGATCCATC AAATGAGATT GTGGTTTCAC CAGAAACTGA AGAGAAAGAC CGTGAAAACA CAGAGCTCAG GGATCTCTTG GTTCAGGAAA TTAATGCAGG AAAACAAGAG AAAGTTCCAA GTATGCTATA CGAGCTAAAC TCGTCCCTCT ACTACTTCTG CAAAGCTAGA ATGCAAGGAG ATGCCATAAT AACCTACCGG AAAATCCCCA AGATGAAAAT CCCACCAACT GTCCAAAGCT TTTGGATCTT AATCGACATG TACTCCTCTC TTGGCATGTA CCGGGAGATC ACAATCGTGT GGGGAGATAT CAAAAGAAAC ATTGCGAGCA AAACCTTAAA GGTAACACAA GATCTGTTAG AGAAGCTTGT GGTGAACTTT CTCAGAGGCG GGTATTTCGA GAGAGTAATG GAGGTTATCA GTTATATGAA GGAGAATGAT ATGATTAATG ATCTAACCAT GTATAAGAAT GAGTATCTTA AGCTTCATAA GAATCTATAT AGAACCTTGA AAGCATCAGA TGTTGTAACA GAGGCTCAAG CTCAGCGGCT TGAGCATGTC AAGGCCTTCA GGAAACTAGT TGGTATAGCA AGTTTCCAAT TTCATATAAT TGACAACAAG GTTATGCTGA AGAATTCGAT CGGAAACTCT CTGCAACGGA GGAGAAATAG AGAACTATAC CTAAATTTGG TCATGGATTC TCCGCCGAAG AAAAATCCGA TGGATGATTT GTTCGGCGAA GATTCCGACA ACGACTCACC ATCTTCGCGT TCGAAATCAT CTTCTTCCGG TAATGCTTCT TCGTCATCTT CTTCCTCCTC GTCTTCTTCA TCTTCGTCTT CCGCTGCGGG AGGAGATGGA GATGGAGATT GTGGTGGTGC GGAATCTGGA AGCGCAAGCG ATAGCGGAAG TGGAAGTAGC GGCGGGAAAG AGGAGCATGG TGATGATAGA GTAGAAAGCT ATAGGAGCAA TGATAATGGA GAAAGTGGAA TTTATCCTTA TGAAGAGGAG GAGGAAGTAG AAGAAGATGA GAAGGATCTT TTTGGGTCTG ATAATGAAGA GTATACTAAG ACACCTGCAA TTAGCACTTA CTCAATTCCA GTTTTGCCTA CGGGATGGAG CAATGATAAC CATGGTGGGA GAGGAGGAAT GGGACGGGGT CGTTGGTCAA ATGGGAGAGG AGGACCTGGG CTTCTTCCTC GGCCTGGACC TTACCCTGGA CGTGGTGGTA ATCGTGGTGG TTTTGGCGGG AGATACCAGA ATTATCAGCG TGACGAACGT TTTGTTTCTG AGCTTAAGCT TTCAAAAAGC AATGAAACGT TGGCTAGAAA ACAAACCAAC TTTCAGGAGC CATGTGAGCT TGCTTGCTAC AGTCGAGTAG AAGGTGGAGA AGTATTCTAC GATGACCGAG GATTGAGGCT TTTCAAACGT CATGTTGCTG AAGAGATTGG TGCGGATTTA AATCAAGGTT ATGATACTTT TATTGAGAAA AAAGACCTGG GCTCTGAGGG CTTTGGTGAC CTTCTTGGCA GTGTTAGAGC AAAAAACATT TCGCTGGAGA ACATTCATTT TGTGACATTT CGTAATAATC TAAATAAGAT ATTGGGCGCT GCTTACAATC GGCATGAAGC ATGGGAAATG GGCGTCCATA AGAGAAATGG AACCATATAT TTAGATGTGC ATAAATTGCC TGAAAGGCCG CAGAGTGACT TAGATCGCCG CAGATGTTAC TGGGGTTATT GTTTCGAAAG CCTTGCGACG GAAGATCCAG GAAGAGCTTA TGGAGAAGAA GTACATCATG TGGATGCAAA TGTTGAATTC TGTTCTGTTG TCAAGACTAA ACTAGGAGCT CACCGAGTTC TGATGGGTGC TGAAATGGAC TGCTGTGATG AAACTGAAGA GGGAAAAAGG ATTTACATAG AGTTGAAAAC ATCTCGTGAG ATACAATCAT TCGTGGCGGG AGTTCCATAC ATTGTCGTTG GATATAGGTA TGAATTTGCC AATCATTCTA AGGATAAACT CAAAAAGCCT TTGGCGATTC AAGTAAACAT TACCATTTTT CCCTTTTCAT ATTGGTGTAG AGATGATGGA GGAAGACTAG TTCGCACAGA GATGCTAAAA ACGAAAGATA TTGCGCACAG AGCCAGATTG AAAAACTTTT GGCAGGGAAA AGTGTGCTTG GCATATGCCG ATGAAGTTCT TTGCTGGCTA TACGGCACTG TTAAAGAAAA CGAAGATTAC ATACTTCAGT TCGTGCACCC TTTCATGAGA CTAGAGCTTC TTCAAGCTCA ATCTTGTCCT GATGCCATCA CTAATCATGT TCACCTTCTA CAACCTCCTG CATCACCACC ACCTCAGTAA |
| Length | 3900 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 10625586.. 10632570 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G17616.1 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| TAIR curator summary | |
| Alias | |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.89898 |
Ahg926773 | Transmembrane Fragile-X-F-associated protein |
| 6.48074 |
Ahg493666 | Uncharacterized protein family (UPF0016) |
| 7.2111 |
Ahg487117 | 5'-AMP-activated protein kinase-related |
| 7.34847 |
Ahg487697 | transducin family protein / WD-40 repeat family protein |
| 10.583 |
Ahg919363 | Nucleotide/sugar transporter family protein |
| 11.4018 |
Ahg937399 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 11.7473 |
Ahg939245 | SET domain protein 14 |
| 12.6491 |
Ahg333551 | dicer-like 1 |
| 14.9666 |
Ahg491860 | CDK-activating kinase 1AT |
| 16.7929 |
Ahg487351 | E3 ubiquitin ligase, putative |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|