| Annotation |
|---|
| Description | jgi|Araly1|344958|fgenesh1_pg.C_scaffold_4001300 |
| Sequence |
ATGAGTACGG TCGATAAAAT GCTGATCAAG GGCATCAGAA GCTTCGACCC AGAAAATAAG AACGTTGTTA CCTTCTTCAG ACCTTTAACC CTAATCGTCG GTGCCAACGG AGCCGGAAAA ACTACGATTA TAGAGTGTTT AAAGGTCTCT TGCACTGGAG AGTTGCCACC GAACGCAAGG TCTGGTCATA GCTTCATTCA TGACCCCAAG GTTGCCGGGG AAACGGAGAC AAAAGCACAA ATTAAGCTGA GATTCAAGAC AGCTGCAGGG AAGGATGTGG TATGCATAAG GTCATTTCAG TTGACGCAAA AGGCTTCAAA GATGGAGTAC AAGGCTATTG AGAGTGTGCT TCAAACCATT AATCCTCACA CTGGAGAGAA AGTATGTCTC AGCTACAGAT GCGCTGACAT GGATAGGGAG ATACCAGCTT TGATGGGTGT GTCAAAAGCT ATTTTAGAAA ACGTCATCTT TGTGCATCAG GATGAGTCTA ACTGGCCACT GCAAGATCCT TCTACTTTGA AAAAGAAGTT TGATGATATT TTTTCAGCCA CCAGATATAC AAAGGCTCTG GAAGTTATTA AGAAACTTCA CAAGGATCAA GCTCAGGAAA TAAAAACTTT TAAGTTAAAG TTGGAAAACC TGCAGACCTT GAAAGATGCA GCTTATAAGC TTCGGGAGAG CATTGCGCAA GATCAAGAAA GGACAGAATC TTCAAAAGTG CAGATGTTGG AACTGGAAAC CAGCATTCAG AAAGTTGATG CTGAAGTTCA TAATAAGGAA ATGATGTTAA AAGATCTGAG AAAGCTACAA GACCAAGTAT CAAGAAAAAC TGCGGAAAGG AGCACCTTGT TTAAGGAGCA GCAGAGACAG TATGCAGCAT TACCTGAGGA AAATGAAGAT ACTATTGAAG AACTGAAAGA ATGGAAAAGC AAGTTTGAAG AAAGAATTGC TCTTTTGGAG ACCAAAATTC GAAAAATGGA GAGAGAGATG GATGACACAG CAACTACAAT TTATTCGCTT AACAATGCAA AAACTAACTA TATGCTGGAG ATCAGCAAGC TACAAACAGA AGCTGAAGCT CATATGCTGC TGAAGAATGA AAGAGATTCT ACCATTCAGA AAATTTTTTC CCATCACAAT TTAGGAAATG TTCCTAGTAC TCCCTTCGGT ACTGAGGTAG TTTTGAATCT CACAAATCGA ATAAAATCAA GACTGGGTGA ACTTGAGATG GACTTGCTCG ATAAGAAGAA ATCAAATGAA ACTGCTCTAA GTACAGCTTG GGATTGCTAT ATGGATGCTA ATGATCGTTG GAAAAGCATT GAAGCTCAGA AACGAGCTAA AGACGAAATC AAGATGGGCA TATCAAAACG CATAGAAGAG AAAGAAATTG AGCGTGATTC ATTTGAATTC GAAATTTCCA CTGTGAATGT TAAACAAACT GATGAAAGAG AGAAACAAGT GCAAATTGAG CTTGAGAGAA AGACAACACA GAATTCTGAA TTGGGATTTG AATCCAAAAT AGAACAGAAA CAGCATGAAA TCTACAGCAT GGAGCATAAA ATTAAGACAC TGAATCGAGA AAGAGATGTT ATGGCTGGTG ATGCTGAGGA TAGAGTGAAA TTGTCTTTAA AGAAGACGGA ACAGGAGAAT CTTAGGAAGA AACACAAAAA GATGTCAATT GAAAGGGAAT ATGATGACCT GAGTTTGAAA TCCCGACAAG CAGAAAAGGA GGTCAACATG TTGCAGATGA AGATACAAGA AGTAAACAAT AGCCTATTCA AGCACAACAA GGATACAGAA TCAAGAAAGA AATACATTGA GTCCAAGCTT CAGGCCTTAA AACAGGAATC AGTTACCATT GATGCTTATC CCAAATTGTT GGAGTCGGCT AAGGACGAAA GAGATGACCG TAAAAGCAAG TATAACATGG CAAATGGTAT GCGCAAGATG TTTGAACCTT TTGAGGATTT AGCACGTCAA CATCATTATT GTCCTTGCTG TGAGCGCTCT TTTACAACTG ATGAAGAGGA TAGCTTTGTT AAGAAGCAAA GGGTAAAGGC TTCAACCACG GGGGAGCATC TTAAAGAATT AGCAGTGGAG TCTTCCAATG CTGACTCTGT ATTTCAGCAG CTAGACAAAC TACGGGCAGT TTTTGAAGAA TACTCGAAAC TAACTAGTGA AATTATTCCT CTCGCTGAGA AAACTTTGCA AGAGCATACA GAAGAGCTGG GTCAGAAGTC TCAAGCTCTT GATGATGTAT TAGGAATCTC TGCCCAGATA AAAGCTGACA AAGACTCAAT TGAAGCACTG GTGCATCCCC TGGAAAATGC TGACAGGACC TTTCAGGAAA TCGTATCCTA CCAAAAGCAA ATTGAAGATC TTGAATATAA GCTTGATTTC AGGGGTCTTG GGGTTAAAAC TATGGAAGAA ATCCAATCAG AATTAAGTAG CCTCCAAAGC AGCAAGGATA AATTGCACGG TGAGCTGGAG AAACTTAGAG ATGACCAGAT TTACATGGAA CGTGATATAT CATGCCTCCA GGCCAGATGG CATGCAGTAA GGGAAGAGAA GGCTAAGGCA GCCAATTTGT TACGCGACGT TACAAAGGCA GAAGAAGACC TGGAGCGTTT AACCGAGGAG AAAAGTCAAC TTGACCTCGA CGTGAAGTAT TTGACCGAGG CACTGGGCCC GTTATCCAAG GAAAAAGAGC AGTTACTGAG TGACTACAAT GATATGAAGA TTAGACGTAA TCAAGAGTAT GAAGAACTGG CTGACAAAAA GAGAAACTAC CAACAGGAAG TTGAGGCATT ACTCAAGGCC AGTTCTAAGA TAAATGAATA TGCTTACAGC TGCTTCACCA GGTATCATGA TCTGAAGAAA GGGGAGCGCT TAAATGATAT TCAAGAAAAG CAGCGGTTAT CCGAATCTCA GCTTCAGAGC TGTGAAGCTA GAAAGAATGA ACTTGCAGGT GAACTGAACA GAAATAAAGA CTTGATGCGG AATCAAGATC AACTGAGAAG AAATATAGAG GATAACTTGA ACTACCGGAC AACAAAAGCA AAAGTTGAGG AGCTTACACC TATTCATTTG TTCTCCATGA TGCTAAGGCT GAACCGGTGT CGTGGAACAG TGTCTGTTTA CGAGAGCAGT ATTTCAAAGA ACAGAGTGGA GCTAAAAGCG GCACAATACA AGGACATAGA TAAGCGGCAC TTTGATCAAC TGATCCAGCT AAAGACAACT GAAATGGCAA ATAAAGACTT GGATAGATAC TACAATGCCC TTGACAAAGC ACTAATGCGC TTCCACACAA TGAAAATGGA GGAAATAAAT AAGATTATAA GGGAACTGTG GCAGCAGACA TACAGAGGTC AAGATATGGA TTACATACGA ATACACTCAG ATTCCGAAGG TGCAGGCACC CGCTCTTACA GCTACAAGGT TCTTGCTTCA TTGATAATTA GGCTGGCTTT AGCTGAGACA TTTTGCTTAA ACTGTGGAAT ATTAGCCCTC GATGAGCCAA CTACAAACCT GGATGGGCCC AATTCAGAAT CTCTTGCAGG AGCTCTTCTT AGGATCATGG AAGACAGAAA GGGCCAAGAG AATTTCCAAC TCATAGTCAT TACCCACGAT GAACGCTTTG CTCAAATGAT TGGCCAACGG CAACATGCTG AAAAATATTA CCGGGTCGCA AAAGATGATA TGTAA |
| Length | 3705 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 14346681.. 14354603 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G31970.1 |
| Description | DNA repair-recombination protein (RAD50) |
| TAIR curator summary | Encodes the Arabidopsis RAD50 homologue. It is involved in double strand break repair. Component of the meiotic recombination complex that processes meiotic double-strand-breaks to produce single-stranded DNA ends, which act in the homology search and recombination. Accumulates in the nucleus during meiotic prophase, a process regulated by PHS1. |
| Alias | [ATRAD50][RAD50] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.69042 |
Ahg354257 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 6.08276 |
Ahg478467 | Mov34/MPN/PAD-1 family protein |
| 6.9282 |
Ahg474438 | Protein kinase superfamily protein |
| 9.69536 |
Ahg323273 | |
| 9.8995 |
Ahg894546 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 9.8995 |
Ahg920450 | periodic tryptophan protein 2 |
| 13.0384 |
Ahg333714 | |
| 14.4914 |
Ahg943269 | thioredoxin family protein |
| 15.0997 |
Ahg493944 | mitogen-activated protein kinase kinase 3 |
| 15.8745 |
Ahg473739 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|