| Annotation |
|---|
| Description | jgi|Araly1|470582|fgenesh2_kg.1__536__AT1G05750.1 |
| Sequence |
ACCATCTCTA TCGAATGGGT CTCCTTCCCG TCGTCGGAAC TATTTCGCCG GCGCTCATCA CCCGCAAGCG TCACGCCAAT CCAAAGATAC AGAGACTTAA CCAATCTACC TCTGAAAACA CTGTCTCATG GACTTCTCGC ATCACTCTCC TCACACGCAA TGGTCGATTA GCAGAGGCAG CGAAGGAATT CTCCGATATG AGACTCGCCG GCGTCGAGCC TAACCACATC ACTTTCATTG CTATACTCTC CGGGTGTGGT GATTTTCCCT CCGGAAGTGA AGCCTTGGGC GATTTGCTTC ATGGGTATGC TTGTAAACTT GGTCTTGATA GAAACCATGT CATGGTTGGC ACTGCAATTA TCGGCATGTA CTCCAAACGT GGTCGTGTTA AGAAGGCTAG ATGTGTTTTT GATTACATGG AAGATAAAAA TTCGGTTACT TGGAATACAA TGATCGATGG GTACATGAGA AGTGGTCAAG TCGATAACGC TGCTAAGATG TTCGACAAAA TGCCTGAACG AGACTTGATT TCTTGGACAG CTATGATAAA TGGGTTTGTT AATAAAGGTT TTCACGAGGA AGCTTTGGCA TGGTTCCGTG AGATGCAGAT TTCTGGAGTG AAACCAGATT ACGTTGCTAT TATTGCTGCT CTTAACGCTT GCACAAACCT TGGTGCTCTC TCGTTTGGAT TATGGGTACA TCGTTATGTT TTGAGTCAGG ATTTCATGAA CAATGTCAGG GTGAGTAATT CACTGATTGA TTTGTATTGT CGATGCGGGT GTGTGGAGTT TGCTCGACAA GTTTTTGACA AAATGGAGAA ACGAACTGTA GTTTCGTGGA ATTCAGTCAT TGTTGGTTTT GCTGCTAATG GAAATGCACA TGAATCTTTA GTCTACTTCA GAAAAATGCA AGAAGAAAGG TTTAAACCTG ACGCAGTCAC TTTCACTGGG GCACTAACCG CGTGTAGCCA TGTAGGTCTA GTTGAAGAAG GTCTTCGATA TTTCCAAATT ATGAAAAGTG ATTACAGAAT CTCGCCTCGA ATTGAGCATT ATGGATGCTT AGTGGATTTG TATAGTCGGG CTGGGAGATT GGAAGACGCT TTGAAGTTGG TACAGAGCAT GCCGATGAAG CCAAATGAAG TTGTGATTGG ATCGTTGCTT GCAGCTTGCA GAAATCATGG GAACAATACC GTCTTAGCAG AGAAGCTGAT GAAGCATCTT ACCGACATGA ATGTGAAAAC CCATTCAAAT TATGTGATTC TCTCGAATAT GTATGCGGCT GATGGAAAAT GGGAAGGAGC AAGTAAGATG AGAAGGAAGA TGAAGGGTCT CGGTCTAAAA AAGCAGCCTG GGTTTAGTTC GATAGAGATT GATGATTGCA CGCATGTGTT CATGGCTGGT GACAGTGCCC ATGTTGAGAC CACTAATATC TGCGAGGTCC TCAAGCTTAT TTCTTCTAAT TTGCGATTAC AGGGCTGTGT AGTTGAAACC CTTGCTGGTG ATCTCCTCAA TGCTTGAAAT CCAGGAACTT CCACATCCCA ATTTTTGCTC AAGTCCTGAG CTTGATCATT AGCTAAAAAT GGCTGACCAC AAAGAAGCCT TATCGTGGTC TTCGAGATGA TGAATTCTAG AATAAACCTC ACTACATAAC CATTATTGCT TGCACAGACC TTTTTACCAG GCCCTACCAG TAAAGATCTG GGTGTACATC GCTATATAAA ACCTAATGAA TAGAGGCCAC ACAATGATAT GGTGCTCTCG TGCTTTCATA AGCTTTGAAT CCAAGCTACC TTACCTCGGT GGCCGTCTCC TCATGCCAAT ATGGTAACCT GAATCCATGT GCATTCTTCT ATGTCTGGTC ATGTTATGGT GAAGTTATTG CTGGTTACTG TCAAGTTAGT AAACAGTTAA ATAACTCTCA CATTTTGCAA AACTTTGGTG TTCTGTTTGC GTGGATTTTG TGATACCTTG GGCATCTTCT AGCATTTGTT TACCTAGCAG TGATCGTAAC ACAGGATTGA TACAGCAAAA GATATAGGCA ATACACCATC TACAAGACCT GCTACCGTGA GTGTAAATAT TCTCCAACAA TTTCCTTGTT AATGCATTTT CTAAAGATAG TGATGTTCTA GCTACATCCG GTATTGTTAC TGTTGTATCA TAAATGTTAA ATTATCTTTG ACGATTATAT GTTACACATA TCAGTTTATT CATAGAAGCA TTTGTATACA TACAATTTCA ACCCAAAACA ATTTTGGACT CCGTTTCCTC TGCATTGCCC GTATCTGTTT TGGGTAGAAC TGTTTTAGGG CGGAGATAAA CACCGATGTA CTGTAGTCCC GAGGCATCAT AAGTCCCATG GAAACCGCCA AACTGAGGAG ATTTCCCGAG TTTAAAAGCA AATTTTTCGT AGCTCGAACC GGAGGTGCCA AAAGGACCGT ACTCATTAGT GTTGGTAGTG AATTTGAGAG ACCTTATGTG AGGATTGCTG GCTTCATACT TGTAATACTC TCCACTGATT CCAGTGATGT ACTCATGCGG ATAGTTGAGC TCTATCTGCT GGGTCCAAAT CACATATAAA GTGAAAAAGT TACAACCATG TTCTTGGCTT TTTAGTTGGA AGTAGAAATT GTGACGGAAA AATAAGACTT ACAACGTCAA ACATGTTGCC GGAAAATGGA CCGTGACGGT CGGATAAAAC GAGTTTTCCG TCCATCACCA ACTGGAATTG GATAGACATA ATTCCTCCAA CGCTATGAGA TAGAAATATC TGAGAGATGA AGCCATCGTG AGATCCTTCG TCCCAGTTTA CAATTGTACT GCTTCTAGCA TCATGCTTCC CTACTGGTCC TATCTTCATT TTCCCTTCCA TTCTTCTACG ACCAAAAACT CTAAGCTTTT ATTTGGATAC ATAACGAAAA ACATAATATA TACATGTAGA GATTCATACT TGTCTAAGTT TGAAGTCTCA GATTGGAATA TGCTTATCCA ATTTGGTATT TGATAATTCA TCTTACAGGA TTCATTGTTT TATTTCATTT ATCTTTGCTT CTCTCCATTA CCCAAATTGT TTTAATAAAA TGACTAATAG AGTTGTTAAC GGAGATTCTT TAAGAT |
| Length | 3116 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 1935477.. 1938654 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G05750.1 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| TAIR curator summary | Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. |
| Alias | [CLB19][PDE247][pigment defective 247] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.38083 |
Ahg477535 | RING/FYVE/PHD zinc finger superfamily protein |
| 22 |
Ahg944316 | |
| 23.7487 |
Ahg947595 | |
| 26.9444 |
Ahg944726 | Pyridine nucleotide-disulphide oxidoreductase family protein |
| 30.5123 |
Ahg897208 | homolog of histone chaperone HIRA |
| 30.6431 |
Ahg888834 | helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding |
| 38.3275 |
Ahg343089 | Pentatricopeptide repeat (PPR) superfamily protein |
| 40.5832 |
Ahg485058 | Pentatricopeptide repeat (PPR) superfamily protein |
| 42.3084 |
Ahg320449 | regulatory particle non-ATPase 13 |
| 44.9444 |
Ahg919366 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|