| Annotation |
|---|
| Description | jgi|Araly1|470704|fgenesh2_kg.1__658__AT1G06820.1 |
| Sequence |
CCAACCATGA ATTTGTGTTT TCAAAATCCC GTAAAGTGTG GTAGTTGTTT GTTCTCCGCG TTGATTACCT CGAATTACAA GCTGGGTACT TGGAATTTAG GGTTTAATGG TCGAGTTTTA GAGAATCGGA AGAACATAAA GCCGCCTGTG GTTACAGTGA AATCCGTTTC TTCAAGTGTG GTTGGTACCG TAGAGGGGAC CAAGAGAGAT GAAACAAGTG TGTACGACGC CATTGTTATC GGTTCTGGGA TTGGTGGATT GGTTGCTGCG ACTCAGCTAG CTGTTAAAGA AGCTAGGGTT TTGGTTCTTG AGAAGTATTT GATTCCTGGT GGGAGCTCTG GTTATTACGA AAGAGATGGT TATACTTTTG ATGTTGGCTC TTCTGTCATG TTTGGTTTCA GTGATAAGGG GAACCTAAAC TTGATTACTC AGGCATTGAA GGCAGTTGGT CGGAAGATGG AGGTTATACC TGATCCTACC ACTGTCCATT TCCATCTCCC CAATAATCTT TCTGTTCGGA TTCATAGAGA ATACGATGAT TTCATCGCTG AGCTTACCAG CAAGTTTCCT CACGAAAAGG AAGGGATCCT CGCATTCTAT GGCGTCTGCT GGAAGATCTT CAACTCATTG AACTCTCTGG AACTAAAGTC TCTAGAAGAG CCTATCTACC TTTTTGGACA GTTCTTTCAG AAGCCGCTTG AATGCCTGAC ACTCGCTTAT TACTTGCCCC AAAATGCTGG AGCTATAGCT CGCAAGTACA TAAAGGATCC TCAATTATTG TCTTTCATTG ATGCAGAGTG TTTCATCGTG AGCACAGTCA ATGCTTTGCA GACGCCAATG ATCAATGCAA GTATGGTTTT ATGTGACAGG CACTATGGAG GAATTAACTA CCCGGTTGGT GGAGTTGGTG GGATTGCCAA GTCTCTGGCA GAAGGACTTG TTGATCAAGG CAGTGAAATA CTCTACAAGG CTAATGTAAA AAGTATAATA CTTGATAATG GAAAGGCGGT TGGTGTAAGG CTAGCAGATG GAAGAGAATT TTTCGCTAAG ACGATAATTT CAAATGCTAC AAGATGGGAT ACGTTTGGGA AGCTGTTAAA AGGAGAAAAG CTTCCTAAAG CAGAAGAAAA TTTCCAGAAA GTGTACGTCA AGGCTCCATC ATTTCTTTCA ATTCACATGG GTGTTAAAGC AGAGGTTCTC CCTCCAGATA CAGATTGCCA TCATTTTGTG CTCGAGGACG ATTGGAAGAA TCTGGAGGAG CCTTATGGCA GTATATTCCT CAGCATTCCA ACCATTCTTG ATCCATCTCT GGCTCCAAAT GGTCGACATA TACTTCATAT ATTTACAACT TCGTCCATCG AGGATTGGGA GGGACTCCCT CCAAAAGAGT ATGAGGCGAA AAAGGAAGAT GTGGCAGCTA GAATAATCCA GAGACTAGAG AAAAAACTGT TTCCAGGGCT CAGTTCATCT ATTACGTTCA AGGAGGTGGG AACACCAAGA ACACACAGAC GGTTTCTTGC GAGGGATAAG GGAACTTATG GGCCAATGCC TAGAGGAACC CCAAAAGGTT TATTAGGCAT GCCGTTCAAT ACAACGGCTA TAGATGGTCT ATACTGCGTG GGGGATAGTT GCTTTCCTGG TCAGGGAGTT ATAGCTGTGG CTTTCTCAGG AGTGATGTGT GCTCATCGGG TAGCTGCTGA TATTGGGCTT GAGAAGAAAT CACGGGTACT TGATGTTGGC CTTCTTGGTT TACTTGGGTG GCTAAGGACA CTCGCATAA |
| Length | 1779 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 2316923.. 2319949 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G06820.1 |
| Description | carotenoid isomerase |
| TAIR curator summary | Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene. |
| Alias | [CCR2][CRTISO][CAROTENOID AND CHLOROPLAST REGULATION 2][carotenoid isomerase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 12.49 |
Ahg475810 | HEAT repeat-containing protein |
| 13.7477 |
Ahg491406 | Peptidyl-tRNA hydrolase II (PTH2) family protein |
| 18.412 |
Ahg496813 | 2-oxoglutarate dehydrogenase, E1 component |
| 24.3311 |
Ahg494356 | ornithine-delta-aminotransferase |
| 29.0345 |
Ahg938459 | mitogen-activated protein kinase phosphatase 1 |
| 30.3974 |
Ahg493698 | auxin response factor 8 |
| 33.1964 |
Ahg481412 | ATPase, F0/V0 complex, subunit C protein |
| 35.4683 |
Ahg473889 | succinate dehydrogenase 5 |
| 36.606 |
Ahg941041 | PHD finger family protein |
| 40.2492 |
Ahg490610 | Protein of unknown function (DUF616) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|