| Annotation |
|---|
| Description | jgi|Araly1|941041|scaffold_601585.1 |
| Sequence |
GACTACAGTT CGATCCAAAG ATGAGCAATC CAAGCAGTTC CGGCTGGGGT TCAAGTTCGA GTTTGACTCA GTTCGGGATC GGTTTGGCTA ATACTGTGCA GTCGGAGGTT GCTCCTTACT TGCCGCTACC GTCGTTACCT ATATTCTGTG GTGCGGCGGA ACCTGGAGAG TTCAAGCTGT TCGATGAGGT TGGCGAAGGT AGTAGCTACA GGTCGTTGGA TCGCAGTGAG ATTCTAGCGC AATCTAGTAG AATCGCAAAC ATGCTTCAAG AGACTGACGT TTCTTACCTG GATCTTAGAA ACGTGGCTAG GGCGCCCGAT TGTAATTCTG GGGAGCATTT TCAGTTATAT GACCAAGTTC TACGATGCAA TCCTGGAGCA TTTGAGTATG TTACCCCTGG TCCGACCTGC GATCCAGTCT TTACCAATGA AGTGCCTCAA AAGATAATTT CTGAGCCAAG TGTTCCTGTC AAGATGCATC GACAGACGGA TAATCATTTA GCTAGGAGTA TCGAACCTGA ACCTGTGAAA AGGGTATTAC GATCAAATCA TGTTGAAGAA GATCATAGTT GGCAGCACGA AACTCTGACA AACCAGTCAC CGAATGATGG TACTGCATAT CATGACTCTC GGCCTGAAAC GATCACCATG AATGAAATTT CTGCTTCCAA AAAGCCAAAG GGAAAGAAGA AACGTAAAGA TGACTTGTCT TCAGTTCAAC CAGATCCATC TGTGCTGCAA GAGTCCATCG TAAATAGCTT TTGTGAGATG TTGGAGGACT TCTGTGGCAG AGCTGAAGTC CCTGGTGATG ATAGGGATGA AACAGAGTGG TCATCAGTTC CTGTTGATGA AGTTCGTGTT CTTGTAAATG AATTGATGAC TATACGGTCA AAAATGCTTC TGCATATGGT ACCTGTTGAT ATTCTATCGA GGTTATTGCG CACTCTGGAT CATCAGATAC ACAGGGCAGA AGGCTTGTCC ATTTATAGTG AACATTCAGA TTCAGATTCA GTTTTGTTGG TTCTTGGTGC CCTTGAGTCA ATTCATGCAT CGCTAGCAGT GATGGCCAAC AGTGATTTGC CAAAGCAGCT CTACAAGGAG GAGATAATTG AGAGAATTCT GGAGTTTTCT AGGCACCAAA TGATGGCTGT TATGTCTGCT TATGATCCAT CATACCGCAC TGGAAGTAAA CCGGCAGAAA ATGTGGCATT TGAAGGTGAT GATGATGATG ATCCTGATCA TGACATGGGC TCAGCCAGCA AAAGGCGGCG CATAGGAAAA AGCGGCAAAG TAAAGAAGTC GTCAGTGAAC AGGATCTCTG GAGCAGTGAA TACTGCACTA CAGAAACTTT GCACAATTCT TGGCTTACTC AAGGACCTGT TGTTGGTAGA AAGGTTGTCT GACAGTTGCA TTTTACAACT GCTGAAGACA AGTATTACAA CATTTCTGGT GGAAAATATC CAACTTCTGC AACTTAAAGC AATTAGCTTA ATCGGTGGTA TTTATAATTC ATATTCTCAA CACCGAACAT ATGTGATAGA TGAAATATCT CAATTGCTCT GGAAGTTACC TTCCTCGAAA CGAGCATTGA GAGCGTATCT TCTCCCTGAT GAAGAACAGA GGCAGATTCA AATGGTCACT GCTTTGCTCA TTCAGTTGGT TCACAACAGC ACAAACCTTC CTGAAACCTC AAGACAGGCT TCCAGTGGAA ACTCTATACT GGAGACCCCA GTTGATGTTG GCTACCTTAC TAAGTGTCAT GAAGCTGCTA CAGAAACATG TTGCCTCTTC TGGACTCGTG TCCTTGAACG ATTTACCAGT TTTAAGGGTC AGGATGCTTC TGAGATAAAA TTGATTATTG AGAATCTTGT TATGGACTTA CTGACAGCAT TAAATCTTCC TGAATATCCG TCTGTGTCTC CTATTCTTGA GGTTCTCTGT GTCATACTGC TACATAATGC AGGGTTGAAA TCAAAAGATG TCTCTGCTCG AATAATGGCC ATTGACTTGC TAGGTACAAT AGCTGCAAGG TTGAAACGTG ATGCTGTCCT CTGCAGTAAA GACAGATTCT GGACGTTACT AGAGTCAGAT AGTGAAATTA ACGTTGATCA AGTTTGCACA AAAGATTGCA CTATTTGTTT AGGTAAAAGG GCTGGGAACT TATTGGTCTG TCAAATTTGT CAAAGGCGGT TTCATGGTGA CTGTTTGGGT TTAAAGGAAC TAGACATTCC AAGTCGGAAT TGGCACTGTC CGTTTTGTGT ATGCAAGAGG AAACTTCTTG TACTACAGTC TTACTGCAAG ACGGACACCA AGGGTACTGG TAAGTTGGAA TCAGAAGAAA GCATCGAAAA TCCAAGTATG ATTACAAAGA CCGAAGTTGT GCAACAGATG CTCTTGAATT ACCTTCAGGA TGCAGGATCT ACTGATGATG TGCATACTTT CATTTGCTGG TTTTATCTGT GCCTTTGGTA TAAAGATGTC CCAAAATCTC AGGATAAATT CAAATATTAC ATTGCCAGAC TGAAAGCAAA GTCAATAATC CGTAACTCTG GAGCAACTAC TTCGTTCTTG ACAAGAGATG CTATCAAGAA GATTACTTTA GCCCTTGGAA TGAATAGTTC CTTTTCCAGA GGATTTGATA AGATTCTAAA CATGCTCCTG GCTAGTTTAA GAGAGAACGC TCCCAACATT AGGGCCAAAG CTTTGCGAGC AGTTAGTATA ATTGTTGAAG CTGATCCAGA GGTACTGTGT GATAAACGTG TTCAGTTGGC TGTTGAGGGA AGGTTTTGTG ATTCTGCAAT ATCTGTTAGA GAAGCAGCAC TGGAACTTGT TGGTAGGCAT ATTGCATCAC ATCCTGATGT TGGTATAAAG TATTTTGAGA AGGTCGCTGA GAGGATTAAG GATACTGGAG TGAGTGTTCG AAAACGAGCC ATCAAGATAA TACGTGACAT GTGTACTTCC AATCCCAACT TCTCTGAATT CACAAGTGCG TGCGCTGAGA TATTATCTCG TATCAGTGAT GATGAGTCTA GCGTTCAGGA TCTTGTGTGC AAAACTTTCT ATGAATTTTG GTTTGAGGAA CCTCCAGGGC ATCATACTCA GTTTGCTAGT GACGCTAGCT CCATTCCACT GGAACTGGAA AAGAAAACCA AGCAAATGGT TGGGTTGTTA AGCAGGACCT CAAATCAACA GCTTCTTGTA ACAATTATTA AGCGTGCCCT GGCCCTGGAT TTTTTTCCTC AAGCAGCTAA AGCTGCTGGT ATTAACCCAG TTGCTCTTGC ATCAGTACGC AGGCGCTGCG AGCTGATGTG CAAGTGCTTA CTGGAAAAAA TATTACAGGT AGAAGAAATG AGCCGTGAAG AAGGAGAGTT GCAAGTACTT CCTTATGTAC TTGTTTTACA TGCTTTCTGT CTGGTGGATC CTGGGCTGTG TACACCGGCT TCAGACCCTA CTAAATTTGT CATCACCTTA CAGCCATATC TGAAGAGTCA GGCTGATAGT AGAACAGGAG CACAGTTACT AGAGAGTATT ATTTTCATTA TCGATTCTGT CCTACCATTG ATCCGGAAGC TGCCTCTAAG TGTCACAGAA GATCTGGAAC AAGATCTAAA GCATATGATT GTTCGGCATT CATTTCTAAC TGTTGTTCAT GCTTGCGTTA GGTGTCTTTG TTCTGTGAGT AAATTGGCGG GGAAAGGTGT TAGCATAGTT GAGCATCTTC TTCAGTTCTT TTTTAAGCGG CTGGAGGCCC AAGGTTCCGA TAACACACAG ATTGCTGGGC GGTCCCTTTT TTGTCTTGGC TTGCTTATTC GCCATGGAAA TTCTCTTATT AGCACCTCAG GTGGCAAGAA TTTCAATCTC TCTGGCTGTC TCAATTTGTT TAAACGACAT CTCCGAACGG AAGATATTGC TTTGAAAGTC AGGTCGCTGC AGGCTTTAGG ATTCATCCTA ATTGCACGAC CTGAGTACAT GTTGGAAGAA GACATTGGAA AGATAATCGA GACTACATTA GCAGATGAAG CAAATGGGCG TATGAAGATG CAAGCATTAC AAAACATCTA TGAATACCTT CTTGATGCGG AAAAACAATT GGGATCCGAG AAAGCCAGTG ATAACGTGGT TAACCCAATT GAGCAAGGTG GCCATACTGT ACCTGTGGCC GCTGGTGCAG GTGACACCAA CATTTGCGGA GGCATTGTGC AGTTGTATTG GGATAAGATA TTAGGTAGAT GCTTAGACTT CGATGATCAA ATTCGCCAGA CTGCTCTCAA GATAGTGGAA GTTGTACTAC GTCAAGGCCT AGTTCATCCT ATTACGTGTG TCCCTTATTT GATTGCCCTC GAGACGGATC CTCAAGAGGC CAACCAAAAG CTGGCCCATC ATTTACTAAT GAATATGCAT GAGAAATATC CGGCTTTTTT TGAGAGCCGT CTCGGTGACG GACTTCAAAT GTCGTTTATC TTCATGCAAT CCATCAGCCA GGTCACTTCA GAACCAAATC AAAGTCTTCA GCAAAAGGGT TCAACAAACA TGTCGGGCAA AAATGATCAT ACTAGTAGTA CTCTCACACA AGCTAGACTT GGAGTCTCTA GGATCTACAA GCTTATCCGT GGAAACAGGG TTTCTCGAAA CAAATTTATG ACTTCAATTG TTCGCAAGTT TGATAATCCA ACCTGGAGTG GCTCAGTAAT ATCCTTTCTG AAGTATTGCA CTGAAACCCT TGCTTTACTT CCATTCACAT CACCTGATGA GCCACTCTAT CTTGTATATT CCATAAACCG AGTTATGCAA ATTCGGGCTG GTGCAGTTGA GTCAAATTTG AAGGCTTTGT TACATAAAGA GTCCGCAAAG ACTCAGCATG GAAATGGAAC GTACCAACAA GGTCCGATTC CCGGACATAT GCACATGATG GATCTAAACA CAAGAATCCA AGAAGAACCA ACACATTGGA ATTCCTATGC CCATCCAACT CCAATTGACC TCAATGGAGC AGTATACCAA GATTCAAGGG ATCAGTTCAC TTCATATCAA GTCCATAATG GGAAAGCAGA TGTTCACAAA ATGACCTCAT CTGATCCTCC TGAATTATCT ACCGATGATC TGCAGAAAAT TAAGGTTGAT TGCGCAGCAG CTATAGCTAT ACAACTTCTT TTGAAGCTCA AGAGATACTT AAAAGTCACA TATAGCTTAA ATGATGACCG GTGCCAAGCC TATTCTCCAA CGGAACCATT GAAGCCAGGA GATCCTCTGT CCAGACAAAG TGTTGCCTTT GACCTCAGTG AAACTCGCAC TGACTTACCT TCAACATATC CAGACTTAGT TCAGAGATAT CAGGAGTTTA AGAACGCAAT GAGAGAAGAT ACGGTTGACT TCACCATCTA TTCATCAAAC GTCAAGAGAA AACGCCCAAC GCCAAGAAAA ACTTCAAGAT CAGCTAAAAA ACCAGTGGCC TACAACGAAG ATGATGATGA TGACGACGAT GATGACAGAG GATGGCATGG AGGAGGAGGA AGAGGAGCTG CTCGGAGACT GAATTACAGC ACCAGAAGTA GCAACAGAAG GTAAAAGAAC AACTTGCTCG TGTT |
| Length | 5584 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 6066396.. 6075107 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G15540.1 |
| Description | PHD finger family protein |
| TAIR curator summary | Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis. |
| Alias | [ATSCC2][EMB2773][SCC2][ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2][EMBRYO DEFECTIVE 2773][SISTER-CHROMATID COHESION 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.16228 |
Ahg495647 | agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein |
| 3.87298 |
Ahg918742 | transcription regulators |
| 7.61577 |
Ahg938922 | glucan synthase-like 11 |
| 8.48528 |
Ahg487067 | ubiquitin-protein ligase 4 |
| 8.94427 |
Ahg475347 | Protein of unknown function (DUF1336) |
| 10.0995 |
Ahg479458 | PTEN 2 |
| 10.198 |
Ahg945283 | ARM repeat superfamily protein |
| 11.8322 |
Ahg481669 | SIT4 phosphatase-associated family protein |
| 12.0416 |
Ahg486657 | nucleotidyltransferases |
| 14.6629 |
Ahg486507 | alpha/beta-Hydrolases superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|