| Annotation |
|---|
| Description | jgi|Araly1|470832|fgenesh2_kg.1__786__AT1G07910.1 |
| Sequence |
ATGGATGCTC CATCTGAAGC CGGAGATCGT TCCGTATCCG TTGTTGCAGA AGCAGTAAAC AACCTATTTG GTGGGTTAAT TCTTGAGGAA AGCAACACTA ATGTTCCAGT CTTACCGAGT CAAACTACAA CTAACCATAG TGTTCAAAAT CTGGTATGGA AACCTAAGTC ATATGGAACT GCTAGTGGTA AAACATCGTC TGTCTCACAG GCAGGTTCTT CTGGAGATGC AAAAGTTGGT CTCAATCTGA GCAAAATTTT CGGAGGTGAT TTGTTGGAAA AGTTTTCGGT CGACAAATCG ACTTATTGTC ATGCTCAAAT CAGAGCCACT TTCTATCCAA AATTTGAGAA CGAAAAGACT GACCAAGAGA TAAGAACAAG AATGATTGAG ATGGTATCTA AAGGATTGGC AACGCTAGAG GTATCTCTTA AGCATTCAGG CTCTCTCTTT ATGTACGCCG GTCACAAGGG GGGAGCATAT GCAAAGAACA GTTTTGGTAA TATTTATACT GCGGTTGGTG TTTTTGTTCT TTCACGGATG TTCAGGGAGG CTTGGGGAAC TAAGTCTCTA GAGAAAGAAG CAGAGTTCAA TGATTTTCTT GAGAAAAATC GCATGTGCAT ATCTATGGAA CTGGTAACAG CTGTTCTTGG AGATCATGGT CAACGCCCAC TGGATGATTA TGTGGTAGTG ACGGCCGTTA CCGAGTTAGG TAATGGTAAG CCCAAGTTCT ATTCAACTTC CGAAATAATT GCATTTTGCC GGAAATGGCG TCTACCAACA AATCATGTTT GGCTGTTTTC CACAAGGAAA TCAGTGACCT CTTTTTTCGC CGCGTTTGAT GCACTCTGTG ATGAAGGGAT AGCAACCTCG GTCTGTAGGG CTCTTGATGA AGTAGCTGAT ATATCAGTCC CAGCCTCAAA GGACCATGTT AAGGTGCAGG GTGAGATATT AGAGGGTCTT GTTGCGCGTA TAGTGAGCAG TCAGAGTGCA AGAGATATGG AAAATGTCTT GAGAGATCAT CCTCCACCAC CCTGGGATGG AGCTAATCTT GATCTGGGAC TCAGTCTAAG AGAGATATGT GCTTCCCATA GATCTAACGA GAAACAGCAA ATGAGAGCAC TTTTAAGGAG TGTTGGGCCA AGCTTTTGCC CTAGTGAAGT GGATTGGTTC GGAGATGATC TCATCCGAAA AATGCTGACA AATCTTTATA GGTTATATGT ATATCTTTCA CTTGCAGTGT CCTTTCATGT GGAAATGGTA CGCTTGATGA AGGAAAAACG TCTTCCAGCC GCGTTCAAGT GTTACCATAA TTTTCATAGA GCTGACGACA TATCACCTGA TAACCTATTT TATAAATTGG TTGTCCATGT GCACAGCGAT TCAGGATTTA GGCGTTACCA AAAAGAGATG AGGCACATGC CTAGTTTGTG GCCTTTATAT CGAGGTTTCT TTGTTGATAT TAATTTGTTC AAGTCAAACA AAGTGAGGGA TCTGATGGCT CTGAAAAGCA TTGATAATGC GGTCAAAGAT GCCAGTGAAA ATGATGGTCA ACGAGAAAAG GATGGTTTGG CTGATGGTGA TGCTAACTTA ATGATCAAAT TAAAGTTTCT CACCTACAAG TTGAGAACCT TTTTGATCCG TAATGGCCTA TCAATTCTAT TTAAAGAAGG GCCAGCAGCT TACAAAACCT ACTATCTTAG ACAAATGAAA ATCTGGGGTA CGTCAGATGG AAAGCAGAAA GAACTTTGCA AAATGCTTGA TGAATGGGCT GCTTACATAA GAAGAAAGTG TGGGAATGAT CAGCTATCTT CATCAACATA CTTAAGTGAA GCTGAGCCAT TCTTGGAGCA GTACGCGAAA CGGAGCCCAA TGAATCAGAT TTTGATAGGG GCTGCTGGGA ACCTTGTTAG AACTGAGGAC TTCTTGGCCA TTGTTGACGG TGATCTAGAT GAAGAAGGCG ATCTTGTGAA AAAAGAAGGA GTGACACCAG CTACTCCTGA GCCAGCTGTG AAGGAAGCTG TCCAAAAGGA TGAGGGGTTA ATTGTGTTCT TTCCAGGGAT TCCTGGATGT GCTAAATCTG CACTTTGTAA GGAGTTATTG AACGCCCCAG GAGGCTTTGC AGATGATAGG CCAGTGCATA CTCTGATGGG TGATCTTGTC AAAGGAAAAT ATTGGCCAAA GGTTGCTGAT GAACGTCGTA AAAAACCACA ATCGATTATG TTGGCTGACA AAAATGCTCC AAATGAAGAT GTCTGGAGAC AGATTGAAGA CATGTGTCGG AGAACTAGGG CTTCTGCAGT TCCAATCGTT GCTGATTCTG AAGGAACCGA TACAAATCCA TATTCACTTG ATGCCTTGGC TGTATTCATG TTCCGGGTAC TTCAACGAGT TAACCATCCG GGAAAGCTCG ACAAGGAATC TTCAAATGCA GGCTATGTGT TATTGATGTT TTATCACCTT TATGAGGGAA AGAACCGCAA TGAATTTGAG AGTGAATTGA TTGAGCGCTT TGGCTCCCTC ATCAAGATGC CACTATTGAA ATCAGACAGG GCTCCTTTAC CTGATCCTGT TAAATCAGTT CTTGAGGAGG GCATAGATTT GTTCAATCTC CACAACAGAA GACATGGGAG ACTCGAGTCG ACAAAAGGAA CATATGCAGC AGAATGGACC AAATGGGAGA AACAACTACG AGATACTTTA GTTGCGAATT CTGAGTATCT CAATTCTATT CAGGTTCCAT TTGAGTCTGT GGTTCATCTA GTGCGAGAAG AGCTAAAAAA AATCGCAAAG GGTGAATACA AGCCACCAAG TTCAGAGAAA ACAAAACATG GGTCTATTGT TTTCGCTGCC ATCAACTTGC CTGCTACTCA AGTTCACAGT CTTCTTGAAA AGTTAGCCGC AGCAAACCCA ACAATGAGAT TTTTTCTAGA GGGCAAGAAA AAGACCATAC AGGAAAAACT TGAACGGTCT CATGTGACGC TTGCCCACAA GAGAAGCCAT GGCGTAGCAG CTGTAGCCAG CTATGGTCAG CACTTGAACA GAGAGATACC CGTAGAGCTC ACGGAGCTCA TCTACAACGA CAAGATGGCA GCTCTAACTG CCAATGTCGG ATGTGTGGAC GGAGAGACGG TAGTCTCCAA GAACGAATGG CCACATGTTA CGTTGTGGAC TGCAGAAGGC GTTACTGCGA AAGAGGCCAA CACGTTACCT CAGCTTTACT TAGAAGGGAA GGCGAGCCGC TTAGTGATAG ATCCTCCGGT GTCAATCTCG GGTCCTCTGG AGTTTTTCTG AATACTTATT AAACATGGAA GGTGCTCTCT CTTGAGGTTG CTCGTGGAAT GGGACACTTA TGGTTGTTAT TATAATAAAC CGTTTCCATT GTCATGAGAT TTTGAGGTTA ATATATTTTT ATTTGGTGTT GAATAAATAA ATGATACAAG TGCCTCTTCA GAATGTGCAT TCATTGATAG AGAAGAGTGT CATATAGA |
| Length | 3488 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 2755213.. 2763664 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G07910.1 |
| Description | RNAligase |
| TAIR curator summary | Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains — an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component— that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo. |
| Alias | [AtRLG1][ATRNL][RNL][AtRLG1][ARABIDOPSIS THALIANA RNA LIGASE][RNAligase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.16441 |
Ahg323555 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 6.9282 |
Ahg474572 | |
| 11.3578 |
Ahg945561 | AT hook motif DNA-binding family protein |
| 15.9687 |
Ahg495764 | Insulinase (Peptidase family M16) protein |
| 17.1464 |
Ahg480346 | CBS domain-containing protein with a domain of unknown function (DUF21) |
| 19.799 |
Ahg935633 | auxin response factor 11 |
| 20.5913 |
Ahg910364 | RNA polymerase Rpb7 N-terminal domain-containing protein |
| 21.2132 |
Ahg476769 | 2-thiocytidine tRNA biosynthesis protein, TtcA |
| 21.8403 |
Ahg929220 | alpha/beta-Hydrolases superfamily protein |
| 22.4499 |
Ahg482420 | PIN domain-like family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|